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chore(deps): bump seqpro to 0.11.0 and genoray to 2.3.0 #157

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Merged
d-laub merged 6 commits into from
May 8, 2026
Merged

chore(deps): bump seqpro to 0.11.0 and genoray to 2.3.0 #157

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1c3d771
ci: lockfile
d-laub May 7, 2026
388996f
fix(deps): bump seqpro to 0.11.0 and genoray to 2.3.0
d-laub May 8, 2026
07f3c4a
style: apply ruff format; fix debug-statements hook Python version
d-laub May 8, 2026
0930bbe
fix(ci): exclude _impl.py from debug-statements hook (match syntax)
d-laub May 8, 2026
d12ca3e
ci: lockfile
d-laub May 8, 2026
6d5e08a
ci: update publish build envs
d-laub May 8, 2026
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94 changes: 59 additions & 35 deletions .github/workflows/publish.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -38,26 +38,26 @@ jobs:
- runner: ubuntu-22.04
target: ppc64le
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
- uses: actions/checkout@v6
- uses: actions/setup-python@v6
with:
python-version: 3.x
python-version: '3.10'
- name: Build wheels
uses: PyO3/maturin-action@v1
with:
target: ${{ matrix.platform.target }}
args: --release --out dist
sccache: true
manylinux: ${{ matrix.platform.target == 'aarch64' && 'manylinux_2_28' || 'auto' }}
sccache: ${{ !startsWith(github.ref, 'refs/tags/') }}
manylinux: auto
- name: Build free-threaded wheels
uses: PyO3/maturin-action@v1
with:
target: ${{ matrix.platform.target }}
args: --release --out dist -i python3.13t
sccache: true
manylinux: ${{ matrix.platform.target == 'aarch64' && 'manylinux_2_28' || 'auto' }}
args: --release --out dist -i python3.14t
sccache: ${{ !startsWith(github.ref, 'refs/tags/') }}
manylinux: auto
- name: Upload wheels
uses: actions/upload-artifact@v4
uses: actions/upload-artifact@v6
with:
name: wheels-linux-${{ matrix.platform.target }}
path: dist
Expand All @@ -79,26 +79,26 @@ jobs:
- runner: ubuntu-22.04
target: armv7
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
- uses: actions/checkout@v6
- uses: actions/setup-python@v6
with:
python-version: 3.x
python-version: '3.10'
- name: Build wheels
uses: PyO3/maturin-action@v1
with:
target: ${{ matrix.platform.target }}
args: --release --out dist
sccache: true
sccache: ${{ !startsWith(github.ref, 'refs/tags/') }}
manylinux: musllinux_1_2
- name: Build free-threaded wheels
uses: PyO3/maturin-action@v1
with:
target: ${{ matrix.platform.target }}
args: --release --out dist -i python3.13t
sccache: true
args: --release --out dist -i python3.14t
sccache: ${{ !startsWith(github.ref, 'refs/tags/') }}
manylinux: musllinux_1_2
- name: Upload wheels
uses: actions/upload-artifact@v4
uses: actions/upload-artifact@v6
with:
name: wheels-musllinux-${{ matrix.platform.target }}
path: dist
Expand All @@ -110,22 +110,37 @@ jobs:
platform:
- runner: windows-latest
target: x64
python_arch: x64
- runner: windows-latest
target: x86
python_arch: x86
- runner: windows-11-arm
target: aarch64
python_arch: arm64
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
- uses: actions/checkout@v6
- uses: actions/setup-python@v6
with:
python-version: 3.x
architecture: ${{ matrix.platform.target == 'x86' && 'x86' || 'x64' }}
python-version: '3.13'
architecture: ${{ matrix.platform.python_arch }}
- name: Build wheels
uses: PyO3/maturin-action@v1
with:
target: ${{ matrix.platform.target }}
args: --release --out dist --find-interpreter
sccache: 'true'
args: --release --out dist
sccache: ${{ !startsWith(github.ref, 'refs/tags/') }}
- uses: actions/setup-python@v6
with:
python-version: 3.14t
architecture: ${{ matrix.platform.python_arch }}
- name: Build free-threaded wheels
uses: PyO3/maturin-action@v1
with:
target: ${{ matrix.platform.target }}
args: --release --out dist -i python3.14t
sccache: ${{ !startsWith(github.ref, 'refs/tags/') }}
- name: Upload wheels
uses: actions/upload-artifact@v4
uses: actions/upload-artifact@v6
with:
name: wheels-windows-${{ matrix.platform.target }}
path: dist
Expand All @@ -135,23 +150,32 @@ jobs:
strategy:
matrix:
platform:
- runner: macos-13
- runner: macos-15-intel
target: x86_64
- runner: macos-14
- runner: macos-latest
target: aarch64
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
- uses: actions/checkout@v6
- uses: actions/setup-python@v6
with:
python-version: 3.x
python-version: '3.10'
- name: Build wheels
uses: PyO3/maturin-action@v1
with:
target: ${{ matrix.platform.target }}
args: --release --out dist --find-interpreter
sccache: 'true'
args: --release --out dist
sccache: ${{ !startsWith(github.ref, 'refs/tags/') }}
- uses: actions/setup-python@v6
with:
python-version: 3.14t
- name: Build free-threaded wheels
uses: PyO3/maturin-action@v1
with:
target: ${{ matrix.platform.target }}
args: --release --out dist -i python3.14t
sccache: ${{ !startsWith(github.ref, 'refs/tags/') }}
- name: Upload wheels
uses: actions/upload-artifact@v4
uses: actions/upload-artifact@v6
with:
name: wheels-macos-${{ matrix.platform.target }}
path: dist
Expand All @@ -162,14 +186,14 @@ jobs:
github.event.workflow_run.conclusion == 'success'
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v6
- name: Build sdist
uses: PyO3/maturin-action@v1
with:
command: sdist
args: --out dist
- name: Upload sdist
uses: actions/upload-artifact@v4
uses: actions/upload-artifact@v6
with:
name: wheels-sdist
path: dist
Expand All @@ -190,9 +214,9 @@ jobs:
# Used to generate artifact attestation
attestations: write
steps:
- uses: actions/download-artifact@v4
- uses: actions/download-artifact@v7
- name: Generate artifact attestation
uses: actions/attest-build-provenance@v2
uses: actions/attest-build-provenance@v3
with:
subject-path: 'wheels-*/*'
- name: Publish to PyPI
Expand Down
6 changes: 4 additions & 2 deletions .pre-commit-config.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,13 @@ repos:
hooks:
- id: check-merge-conflict
- id: debug-statements
language_version: python3
exclude: python/genvarloader/_dataset/_impl\.py
- id: mixed-line-ending
- id: check-case-conflict
- id: check-yaml
- repo: https://github.com/astral-sh/ruff-pre-commit
rev: v0.15.2
rev: v0.15.12
hooks:
- id: ruff
- id: ruff-format
Expand All @@ -22,7 +24,7 @@ repos:
always_run: true
stages: [pre-push]
- repo: https://github.com/commitizen-tools/commitizen
rev: v4.13.8
rev: v4.15.1
hooks:
- id: commitizen
stages: [commit-msg]
Expand Down
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