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1. DeepPBS DeepPBS Public

   Geometric deep learning of protein–DNA binding specificity

   Python 76 8

2. RosettaCommons/foundry RosettaCommons/foundry Public

   Central repository for biomolecular foundation models with shared trainers and pipeline components

   Python 709 109

3. RNAscape RNAscape Public

   Geometry faithful 2D RNA visualization

   Python 4

4. maclean-lab/RVAgene maclean-lab/RVAgene Public

   Recurrent Variational Auto gene encoder

   Jupyter Notebook 20 5

5. DNAproDB DNAproDB Public

   DNAproDB processing pipeline (2024)

   Python 7

6. RNAproDB RNAproDB Public

   RNAProDB developement

   HTML 1