RKI MF1 Bioinformatics

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1. clean clean Public

   A nextflow pipeline for decontamination of short reads, long reads and contigs

   Nextflow 59 5

2. ont-methylation ont-methylation Public

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3. breakfast breakfast Public

   breakfast is a simple and fast tool for clustering SARS-CoV-2 genomes using precalculated sequence features (e.g. nucleotide substitutions).

   Python 11 1

4. omnifluss omnifluss Public

   Computational workflow for virus genome reconstruction

   Nextflow 10

5. viruswarn-sc2 viruswarn-sc2 Public

   VirusWarn-SC2 is a simple Variants of concern aLert system script for SARS-CoV-2.

   HTML 7 1

6. covsonar covsonar Public

   A database-driven system for handling genomic sequences of SARS-CoV-2 and screening genomic profiles.

   Python 7