increased precision of metrics in csv files, added code for ranking#40
Open
FabianIsensee wants to merge 3 commits intoneheller:masterfrom
Open
increased precision of metrics in csv files, added code for ranking#40FabianIsensee wants to merge 3 commits intoneheller:masterfrom
FabianIsensee wants to merge 3 commits intoneheller:masterfrom
Conversation
…s possible, added ranking code
Contributor
Author
|
I also updated the docker instructions and added a dockerfile + inference script for the nnunet cascade |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Ranking code
increased precision of metrics in csv files to prevent ties as much as possible, added ranking code
see ranking.py
Also added nnUNet_summary.csv to highlight how the ranking works. Feel free to ask questions :-)
Checklist
masterREADME.mdchangelog.mdsetup.pyannotation.importto completionlabels.py(executesample_segmentations.py, andafter that
compute_tolerances.py. Then put the new values in. Do not re-use sampled segmentations from prior dataset versions!)If you want me to increase the version number please let me know
Best,
Fabian