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mayankgandhi13/README.md

Hi 👋, I'm Mayank Gandhi

Bioinformatics | Genomics | AI for Biological Data

I work at the intersection of bioinformatics, data science, and artificial intelligence to analyze complex biological systems. My work focuses on genomics, transcriptomics, RNA-seq analysis, and computational modelling, combining mathematics, machine learning, and scalable pipelines to uncover biological insights.

🎓 MS Bioinformatics — Northeastern University

🎓 B.Tech Biotechnology — MIT-ADT University

🌐 Portfolio:
mayankgandhi13.github.io


🔬 Current Interests

  • Computational genomics & transcriptomics
  • RNA-seq pipelines (STAR, Salmon, DESeq2)
  • Machine learning for biological data
  • Bioinformatics workflows on HPC systems
  • AI-driven biomarker discovery

📫 Reach Me

📧 135.mayankgandhi@gmail.com

📧 gandhi.may@northeastern.edu


🌐 Connect With Me

🧰 Tech Stack

Snake eating my contributions

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  1. cellchatr cellchatr Public

    Fast R package for CellChat database querying backed by Rust via extendr

    HTML 1

  2. pancreas-deconv-pipeline pancreas-deconv-pipeline Public

    Bulk RNA-seq cell type deconvolution pipeline using MuSiC/MuSiC2 on public pancreatic islet data. Includes QC, validation, benchmarking, and stacked bar plot outputs.

    Shell

  3. NeuroExprViz NeuroExprViz Public

    Cross-tool Alzheimer's transcriptomics visualization — GSE5281 analyzed in R (limma), Python (Seaborn), and JavaScript (Plotly.js) to compare which visualization stack is most efficient for bioinfo…

    R

  4. Transcriptomics-Analysis-of-COPD-vs-Control-Lung-Tissue-GSE76925 Transcriptomics-Analysis-of-COPD-vs-Control-Lung-Tissue-GSE76925 Public

    Genome-wide transcriptomic profiling of COPD vs. control lung tissue (GSE76925) using RNA-seq. Includes quality control, normalization, differential expression analysis (DESeq2/edgeR), and function…

    HTML

  5. scqc scqc Public

    Single-cell RNA-seq QC pipeline written in Rust

    Rust

  6. ivSYTE ivSYTE Public

    CFO investor dashboard for IvSYTE Diagnostics — a hypothetical multi-cancer early detection company. Built with HTML, Chart.js, and vanilla JS. Includes funding timeline, market opportunity, revenu…

    HTML