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Add pydantic-xml model generation, XML schema validation tests, and CI workflow - #94

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pahjbo merged 52 commits into
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copilot/vodmlpydanticgenerate-xml-json-serialization
Jul 15, 2026
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Add pydantic-xml model generation, XML schema validation tests, and CI workflow#94
pahjbo merged 52 commits into
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copilot/vodmlpydanticgenerate-xml-json-serialization

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Copilot AI commented Mar 20, 2026

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Adds a new Gradle task vodmlPydanticGenerate that transforms VO-DML models into Python pydantic-xml classes for XML/JSON serialisation without SQLAlchemy coupling, backed by interoperability tests and a dedicated CI workflow.

XSLT generator — tools/xslt/vo-dml2pydantic.xsl

  • Maps objectType/dataTypeBaseXmlModel subclasses with element() field descriptors
  • enumerationstr, Enum; primitiveType → single-field wrapper
  • Reuses binding_setup.xsl and all existing binding/mapping infrastructure
  • Safe maxOccurs handling via number()/string comparison (avoids xsd:int() failures on unbounded)

Gradle plugin — VodmlPydanticTask.kt / VodmlGradlePlugin.kt

  • New VodmlPydanticTask mirrors VodmlPythonTask, sharing outputPythonDir
  • vodmlPydanticGenerate registered alongside existing generation tasks

Python interoperability tests — PydanticInteropTest.py

  • SampleModelInteropTest, LifecycleModelInteropTest, SerializationExampleInteropTest: construct the same object graphs as the Java tests, serialise to XML/JSON, write to interoperability/python/, assert round-trip fidelity
  • JavaInteropReadTest: reads Java-produced JSON and XML from interoperability/java/, validates structure and field values, and schema-validates each XML against its generated XSD using lxml
# Schema validation is applied to every Java interop XML file read in
def test_sample_xml_schema_valid(self):
    xml_bytes = (self._JAVA_DIR / "sample.xml").read_bytes()
    _validate_xml(xml_bytes, "Sample.vo-dml.xsd", self)

Schema validation of Python-generated XML is deferred until the pending namespace/xsi:type generation fixes land.

Build wiring

  • pytestPydantic task depends on both vodmlPydanticGenerate and vodmlSchema (ensures XSD files are present before tests run)
  • --junit-xml flag added to the pytest command for CI result ingestion
  • pydantic-xml==2.13.1 added to the sample virtualenv pip dependencies

CI — .github/workflows/pydantic-test.yml

Dedicated workflow on push/PR to main. Uses explicit step ordering to work around Gradle composite-build task-dependency limitations (the root build.gradle.kts already notes this constraint):

  1. Publish runtime + ivoa base model to Maven Local
  2. Run Java sample tests → produces interoperability/java/ fixtures
  3. ./gradlew :ivoa:vodmlPydanticGenerate :sample:pytestPydantic
  4. Publish JUnit results via EnricoMi/publish-unit-test-result-action
Original prompt

This section details on the original issue you should resolve

<issue_title>generate pydantic models</issue_title>
<issue_description> pydantic model generation could be done as a python alternative to that in #8 - however, as pydantic is rather opinionated it is unlikely to produce serialisations that are compatible with the serializations from other languages

see pydantic/pydantic#710</issue_description>

<agent_instructions>start off by creating a plan -do not write code - in the first instance concentrate only on xml and json serialisation.

  • create a new task vodmlPydaticGenerate in the gradle plugin and create a new XSLT transformation that will perform the actual generation - the task can use the same output directory as the existing vodmlPythonGenerate task
  • create tests for each of the sample models that read the java produced serialisations from the interoperability/java directory and then reserialize those model instances to an interoperability/python directory and then do comparisons between the serialised files as a way of determining how good the code generation is</agent_instructions>

Comments on the Issue (you are @copilot in this section)

@pahjbo can use https://github.com/dapper91/pydantic-xml for the xml support @pahjbo actually https://xsdata-pydantic.readthedocs.io/en/latest/ looks better and with https://sqlmodel.tiangolo.com which is built on SQLAlchemy, it does look like there is some hope for a unified approach.... @pahjbo there is also https://github.com/mr-fatalyst/oxyde

💡 You can make Copilot smarter by setting up custom instructions, customizing its development environment and configuring Model Context Protocol (MCP) servers. Learn more Copilot coding agent tips in the docs.

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github-actions Bot commented Mar 20, 2026

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Test Results

1 tests  +1   0 ✅ ±0   0s ⏱️ ±0s
1 suites +1   0 💤 ±0 
1 files   +1   0 ❌ ±0   1 🔥 +1 

For more details on these errors, see this check.

Results for commit 0fb7728. ± Comparison against base commit bc613d1.

♻️ This comment has been updated with latest results.

Copilot AI and others added 2 commits March 20, 2026 13:05
…y tests

Co-authored-by: pahjbo <273267+pahjbo@users.noreply.github.com>
…gnore

Co-authored-by: pahjbo <273267+pahjbo@users.noreply.github.com>
Copilot AI changed the title [WIP] Generate Pydantic models for XML and JSON serialization Add vodmlPydanticGenerate task for pydantic-xml model generation from VO-DML Mar 20, 2026
Copilot AI requested a review from pahjbo March 20, 2026 13:06

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@copilot add another python test that reads the model instances from the interoperability/java directory and checks for errors

… errors

Co-authored-by: pahjbo <273267+pahjbo@users.noreply.github.com>

Copilot AI commented Mar 20, 2026

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@copilot add another python test that reads the model instances from the interoperability/java directory and checks for errors

Added JavaInteropReadTest in commit 10f918e. It reads all three Java-produced model files from interoperability/java/ (both .json and .xml) and asserts correctness of the extracted data:

  • JSON tests: parse the VODML container format (refs/content), validate names, counts, classifications, coordinate values, filter names, zval lists, and @type discriminators for polymorphic types (Dcont/Econt).
  • XML tests: parse the Java JAXB XML using xml.etree.ElementTree, navigating dotted element names and checking xsi:type attributes.
  • A guard test (test_java_interop_files_exist) fails fast with a clear message if the Java interop files haven't been produced yet.

Run with: ./gradlew :ivoa:jar :sample:pytestPydantic (the :ivoa:jar prefix is required per AGENTS.md, same as for :sample:test).

… GitHub Actions workflow

Co-authored-by: pahjbo <273267+pahjbo@users.noreply.github.com>
Copilot AI changed the title Add vodmlPydanticGenerate task for pydantic-xml model generation from VO-DML Add pydantic-xml model generation, XML schema validation tests, and CI workflow Mar 20, 2026
pahjbo added 3 commits March 20, 2026 16:06
accepting them, as they are at least trying to deal with namespaces -
however it looks like CO-PILOT is struggling - I think it will be necessary to go back to human research
@pahjbo pahjbo mentioned this pull request Mar 20, 2026
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pahjbo commented Jun 26, 2026

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Am now adopting a different strategy to get the XML serialization parity with Java - am trying to get the ID/IDREF functionality implemented within xsdata rather than layered on top. (see tefra/xsdata#1222)

pahjbo added 18 commits June 30, 2026 16:19
have copied the main json handling from xsdata to the python runtime to allow for detailed customization
…lization

# Conflicts:
#	.gitignore
#	tools/gradletooling/sample/interoperability/java/jpatest.xml
#	tools/gradletooling/sample/interoperability/java/lifecycle.xml
#	tools/gradletooling/sample/interoperability/java/notstccoords.json
#	tools/gradletooling/sample/interoperability/java/notstccoords.xml
#	tools/gradletooling/sample/interoperability/java/sample.xml
#	tools/gradletooling/sample/interoperability/java/serializationsample.json
#	tools/gradletooling/sample/interoperability/java/serializationsample.xml
would be nice to include subsetting in future if possible.
the references are hard-wired - this is undesirable in general, but done to make progress on the serialization.
also realigning wrapping with java
… not using the pydantic json functions, but the ones in vodml_runtime.xsdata

* will only work with modified xsdata - see tefra/xsdata#1222
* will only work for the "wrapped" VO-DML polymorphism style.
* there is still probably some cruft to remove from the vodml_runtime.xsdata classes, as the starting point was the general equivalent classes from xsdata itself
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pahjbo marked this pull request as ready for review July 15, 2026 16:04
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pahjbo commented Jul 15, 2026

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This has had quite a bit of non-AI input as well, and although it is not completely passing tests, I am going to merge as there are some changes to the java side that need to be incorporated going forward too

@pahjbo
pahjbo merged commit ef4659c into main Jul 15, 2026
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generate pydantic models

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