Refactor check_value()

[PietrH]

check_value() now:

• Doesn't return quite as many options.
• Makes a suggestion when there is a value that only needs half of it's characters mutated to match.
• No longer uses {assertthat}.
• Uses {cli} styling instead.

I pushed some changes intended for #602 to this branch, no biggie since I'm merging into that branch anyway.

[codecov]

Codecov Report

❌ Patch coverage is 93.18182% with 3 lines in your changes missing coverage. Please review.
⚠️ Please upload report for BASE (587-get_bibliography@dd5872a). Learn more about missing BASE report.

Files with missing lines	Patch %	Lines
R/utils.R	93.18%	3 Missing ⚠️

Additional details and impacted files

@@                   Coverage Diff                   @@
##             587-get_bibliography     #603   +/-   ##
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  Coverage                        ?   95.05%           
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  Files                           ?       34           
  Lines                           ?     1639           
  Branches                        ?        0           
=======================================================
  Hits                            ?     1558           
  Misses                          ?       81           
  Partials                        ?        0           

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[Copilot]

Pull request overview

This pull request refactors the internal check_value() helper to use {cli} error styling and adds a typo-suggestion path, while also updating bibliography/citation output and documentation cross-links to include get_bibliography() among related “access functions”.

Changes:

• Refactor check_value() to replace {assertthat} with {cli} aborts, introduce structured error classes, and add a Levenshtein-based “Did you mean …?” suggestion.
• Update test-check_value.R to assert on error classes and add a new test covering the suggestion behavior.
• Update etn_citation() output (and the associated snapshot) and expand .Rd “Other access functions” cross-references to include get_bibliography().

Reviewed changes

Copilot reviewed 4 out of 14 changed files in this pull request and generated 3 comments.

Show a summary per file

File	Description
R/utils.R	Refactors check_value() error handling and adds suggestion logic; rewrites etn_citation() output formatting.
R/get_bibliography.R	Adds @family access functions to include it in generated cross-links.
tests/testthat/test-check_value.R	Updates expectations to check error classes; adds typo-suggestion test.
tests/testthat/_snaps/get_package/bibliography.csv	Updates snapshot to match new etn_citation() formatting.
man/get_bibliography.Rd	Adds “Other access functions” \seealso block for cross-linking.
man/get_tags.Rd	Adds get_bibliography() to “Other access functions” list.
man/get_package.Rd	Adds get_bibliography() to “Other access functions” list.
man/get_cpod_projects.Rd	Adds get_bibliography() to “Other access functions” list.
man/get_animals.Rd	Adds get_bibliography() to “Other access functions” list.
man/get_animal_projects.Rd	Adds get_bibliography() to “Other access functions” list.
man/get_acoustic_receivers.Rd	Adds get_bibliography() to “Other access functions” list.
man/get_acoustic_projects.Rd	Adds get_bibliography() to “Other access functions” list.
man/get_acoustic_detections.Rd	Adds get_bibliography() to “Other access functions” list.
man/get_acoustic_deployments.Rd	Adds get_bibliography() to “Other access functions” list.

Files not reviewed (10)

• man/get_acoustic_deployments.Rd: Generated file
• man/get_acoustic_detections.Rd: Generated file
• man/get_acoustic_projects.Rd: Generated file
• man/get_acoustic_receivers.Rd: Generated file
• man/get_animal_projects.Rd: Generated file
• man/get_animals.Rd: Generated file
• man/get_bibliography.Rd: Generated file
• man/get_cpod_projects.Rd: Generated file
• man/get_package.Rd: Generated file
• man/get_tags.Rd: Generated file

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