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Add cellpose docs #28

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46ea818
Fix Classifier import path for compatibility with napari-convpaint 0.5.2
somaSystems Nov 10, 2024
38ef343
Add Cellpose installation instructions to installation docs
somaSystems Nov 10, 2024
5a0de33
Add Cellpose installation instructions to installation docs
somaSystems Nov 10, 2024
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2 changes: 1 addition & 1 deletion morphodynamics/analysis_par.py
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Expand Up @@ -6,7 +6,7 @@
from scipy.ndimage import center_of_mass
from scipy.interpolate import splev
import skimage.io
from napari_convpaint.conv_paint_utils import Classifier
from napari_convpaint.conv_paint_classifier import Classifier

from .segmentation import (
segment_cellpose,
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7 changes: 5 additions & 2 deletions mydocs/Installation.ipynb
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Expand Up @@ -31,10 +31,13 @@
"\n",
" pip install git+https://github.com/guiwitz/MorphoDynamics.git@master#egg=morphodynamics\n",
"\n",
"To update the softate you can simply use:\n",
"To update the software you can simply use:\n",
"\n",
" pip install --upgrade morphodynamics\n",
"\n",
" pip install --upgrade morphodynamics"
"If you wish to enable Cellpose-based feature extraction, you can install the necessary dependencies with:\n",
"\n",
" pip install 'napari-convpaint[cellpose]'\n"
]
},
{
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