extract_rate_change_reverse_times now works with BEAST 2.7 xmls.

Bug fix:

• extract_rate_change_reverse_times now works with BEAST 2.7 xmls.

Dependency on legacy-cgi included in setup.py.

1.6.1

Update setup.py version number.

Now works with BEAST version(s) 2.7.

1.6.0

Now works with beast version(s) 2.7. (#28)

Bug fix: Improved initial tree handling in BEAST2XML.

Bug fix: If initial tree element is missing from xml template and you wish to add a Newick format initial tree you can now do so. Previously an error would appear.

Can now extract date data from more xmls.

* New methods for extracting data from a xml:
* extract_youngest_year_decimal
* extract_rate_change_reverse_times

* Can now extract date from more xmls.

* Docstring for extract_sequence_year_decimals

New methods for extracting data from a xml

• extract_youngest_year_decimal
• extract_rate_change_reverse_times

Method for fixing values in dimension to 0.

add_rate_change_dates has an offset_earliest option to account for #21.

Method for fixing values in dimension.

Method beast2xml.fix_first_few_dimension_values fixes the first few dimension values for a parameter. This is a great way to fix the sampling proportion to 0 for the period before the first sample.

1.3.9

Fixing bug in adding change dates.

Fixing bug in adding change dates.

1.3.8

Fixing bug in adding change dates.