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Add BioTek EL406 plate washer backend#878

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tfehlmann wants to merge 1 commit intoPyLabRobot:mainfrom
tfehlmann:feature/biotek-el406-plate-washer-squashed
Open

Add BioTek EL406 plate washer backend#878
tfehlmann wants to merge 1 commit intoPyLabRobot:mainfrom
tfehlmann:feature/biotek-el406-plate-washer-squashed

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@tfehlmann tfehlmann commented Feb 5, 2026

Summary

  • Adds a new pylabrobot.plate_washing module with PlateWasher resource and PlateWasherBackend base class
  • Implements BioTekEL406Backend for the BioTek EL406 plate washer, communicating via FTDI USB serial
  • Backend is composed from mixins: Communication, Queries, Actions, and Steps (manifold, peristaltic, syringe, shake)
  • 374 tests covering all operations, wire format encoding, parameter validation, and error handling

Supported operations

Subsystem Operations
Manifold wash, dispense, aspirate, prime, auto-clean
Peristaltic pump prime, dispense, purge (with column/row selection)
Syringe pump dispense, prime (with column selection)
Shake configurable intensity and duration
Queries manifold type, serial number, sensor status, syringe box info
Actions abort, pause, resume, reset, self-check

Architecture

  • Binary protocol with framed messages, ACK/NAK flow control, and async status polling
  • MockFTDI test double enables hardware-free testing
  • 160+ device error codes with descriptive messages
  • Follows existing pylabrobot patterns (mirrors PlateReader/PlateReaderBackend hierarchy)

Test plan

  • 374 unit tests passing (pytest pylabrobot/plate_washing/biotek/)
  • mypy clean (0 errors across all 29 source files)
  • ruff clean (no lint issues)
  • Hardware integration test on physical EL406 device

🤖 Generated with Claude Code

Add a new plate washing module with a backend for the BioTek EL406
plate washer, communicating via FTDI USB serial interface.

Architecture:
- PlateWasher resource and PlateWasherBackend base class
- BioTekEL406Backend composed from mixins: Communication, Queries,
  Actions, and Steps (manifold, peristaltic, syringe, shake)
- Binary protocol with framed messages, ACK/NAK flow control,
  and async status polling for long-running operations

Features:
- Manifold wash/dispense/aspirate/prime/auto-clean operations
- Peristaltic pump prime/dispense/purge with column/row selection
- Syringe pump dispense/prime with column selection
- Plate shaking with configurable intensity and duration
- Device queries (manifold type, serial number, sensor status)
- Action commands (abort, pause, resume, reset, self-check)
- 160+ device error codes with descriptive messages
- MockFTDI test double for hardware-free testing

374 tests covering all operations, wire format encoding, parameter
validation, communication protocol, and error handling.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
@tfehlmann tfehlmann force-pushed the feature/biotek-el406-plate-washer-squashed branch from f9b25f5 to 4b77208 Compare February 5, 2026 23:21
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