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Localisation - #519

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jliermann merged 30 commits into
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localisation
Jun 18, 2026
Merged

Localisation#519
jliermann merged 30 commits into
mainfrom
localisation

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jliermann and others added 23 commits April 29, 2026 16:48
Co-authored-by: Copilot <copilot@github.com>
Co-authored-by: Copilot <copilot@github.com>
remove external resources since below we only link to KB
Remove under construction and other maintenance
Upgrade Docusaurus and GitHub Actions dependencies to latest versions, misc. fixes

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Pull request overview

This PR updates the documentation structure and internal links around “data formats”/metadata/provenance topics, while also bumping a few Docusaurus/Crowdin tooling dependencies.

Changes:

  • Bump Docusaurus packages to ^3.10.1 and Crowdin CLI to ^4.14.3.
  • Replace the old “format standards” docs structure with a new Data Formats page (/docs/data_formats) and update cross-links accordingly.
  • Remove several stub/under-construction topic pages (e.g., provenance, SMILES, mzML, InChI, CT files).

Reviewed changes

Copilot reviewed 32 out of 33 changed files in this pull request and generated 7 comments.

Show a summary per file
File Description
package.json Bumps Docusaurus and Crowdin CLI versions.
docs/60_topics/63_data_description_annotation/15_provenance.mdx Removes the provenance stub page.
docs/60_topics/63_data_description_annotation/10_metadata.mdx Updates links to the new /docs/data_formats route and adjusts formatting.
docs/60_topics/63_data_description_annotation/00_data_description_annotation.mdx Removes the provenance internal link and adjusts wording.
docs/60_topics/62_data_formats/30_smiles.mdx Removes the SMILES page content.
docs/60_topics/62_data_formats/25_mzML.mdx Removes the mzML stub page.
docs/60_topics/62_data_formats/20_JCAMP-DX.mdx Removes the JCAMP-DX page content.
docs/60_topics/62_data_formats/10_ct_files.mdx Removes the CT files page content.
docs/60_topics/62_data_formats/00_format_standards.mdx Removes the old “format standards” page content.
docs/60_topics/62_data_formats/category.json Removes the category doc-link configuration for the old format standards doc.
docs/60_topics/62_data_formats.mdx Adds a new consolidated “Data Formats” page at /docs/data_formats.
docs/60_topics/61_identifiers/30_cas_rn.mdx Removes the CAS RN stub page.
docs/60_topics/61_identifiers/20_inchi.mdx Removes the InChI stub page.
docs/60_topics/61_identifiers/10_pid.mdx Removes the provenance internal link reference.
docs/60_topics/61_identifiers/00_identifiers.mdx Replaces the internal InChI link with an external reference.
docs/60_topics/00_topics_guide.mdx Updates references to “data formats standards” to the new /docs/data_formats page and refreshes internal links.
docs/50_data_publication/70_publishing_standards/10_publishing_standards_authors.mdx Updates “data formats” link to the new /docs/data_formats page and reformats lists.
docs/50_data_publication/60_machine-readable_chemical_structures.mdx Replaces internal links to removed topic pages with external references.
docs/50_data_publication/25_best_practice.mdx Updates “format standards” references to /docs/data_formats and replaces internal CT-file links.
docs/50_data_publication/10_repositories.mdx Removes the provenance internal link reference and reformats lists.
docs/50_data_publication/00_data_publishing.mdx Updates “format standards” link to /docs/data_formats and removes provenance internal link.
docs/40_smartlab/15_choose_eln.mdx Updates “format standards” link to /docs/data_formats.
docs/40_smartlab/10_eln.mdx Updates “format standards” link to /docs/data_formats and adjusts MDX list formatting.
docs/40_smartlab/00_smartlab.mdx Rewrites/expands the SmartLab introduction and updates “format standards” reference to /docs/data_formats.
docs/30_data/40_data_documentation.mdx Updates “format standards” link to /docs/data_formats.
docs/30_data/30_data_organisation.mdx Updates “format standards” link to /docs/data_formats and reformats bullet lists.
docs/30_data/00_data_guide.mdx Minor copy edit removing mention of external resources.
docs/20_role/40_data_steward.mdx Updates “format standards” reference to /docs/data_formats.
docs/20_role/30_student.mdx Updates “format standards” link to /docs/data_formats and removes extra blank lines.
docs/10_domains/60_synthetic_chemistry.mdx Updates “format standards” links to /docs/data_formats.
docs/00_intro/20_data_life_cycle.mdx Updates “format standards” link to /docs/data_formats.
docs/00_intro/10_fair.mdx Updates “format standards” link to /docs/data_formats.

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Comment thread docs/10_domains/60_synthetic_chemistry.mdx Outdated
Comment thread docs/60_topics/62_data_formats.mdx Outdated
Comment thread docs/50_data_publication/60_machine-readable_chemical_structures.mdx Outdated
Comment thread docs/50_data_publication/60_machine-readable_chemical_structures.mdx Outdated
Comment thread docs/50_data_publication/60_machine-readable_chemical_structures.mdx Outdated
Comment thread docs/60_topics/63_data_description_annotation/00_data_description_annotation.mdx Outdated
Comment thread docs/60_topics/62_data_formats.mdx Outdated
jliermann and others added 4 commits June 18, 2026 17:06
Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
jliermann and others added 3 commits June 18, 2026 17:08
Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
@jliermann
jliermann merged commit 3b318cd into main Jun 18, 2026
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3 participants