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feat(spark): JMEOS 1.4 + BerlinMOD Q1-Q17 + 100% MobilityDB SQL parity (907 tests)#5

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feat(spark): JMEOS 1.4 + BerlinMOD Q1-Q17 + 100% MobilityDB SQL parity (907 tests)#5
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@estebanzimanyi estebanzimanyi commented May 6, 2026

Summary

  • JMEOS-1.4 integration with full MEOS 1.4 API rename fixes
  • BerlinMOD Q1–Q17 portable SQL benchmark (18/18 queries run on MobilitySpark, MobilityDuck, MobilityDB)
  • 907 unit tests across 44 test classes — 0 failures
  • 92.6% MobilityDB SQL paritydocs/parity-status.md (audit script: scripts/parity-audit.py). Compare to MobilityDuck 79.3%.
  • Compacted commit history — 28 batch commits squashed into a single themed feat(parity) commit per the "1 feature = 1 commit" ecosystem policy.

Per-section coverage

22 of 51 active sections at 100%. See docs/parity-status.md for the full table.

Sections still under 100% are dominated by:

  • Tile / split / value-set returning typed Datum or Temporal** double-pointer arrays — the remaining 10% (geo/058 tile, temporal/025 tile, getValue/getValues/SeqSetGaps/timeSplit) needs typed Datum dispatch + complex iteration patterns
  • segmentMaxDuration / segmentMinDuration — not exposed as MEOS C API
  • asMVTGeom / geoMeasure — multi-array MVT output

Methodology

Adapted from MobilityDuck/scripts/parity-audit.py with two MobilitySpark-specific enhancements:

  • Parses spark.udf().register("name", ...) from src/main/java/**/*.java
  • Match strategy: snake_case → camelCase, type-prefix stripping (tnumber/tpoint/tgeo/…), wrapper-style dispatcher recognition (temporal_abovestboxAboveTpoint), type-suffix matching (always_eqalwaysEqTintInt)

Same out-of-scope and deferred bucketing as MobilityDuck:

  • Out of scope (PG-only): GiST/SPGiST opclasses, _in/_out/_recv/_send, _transfn/_combinefn/_finalfn, _sel/_joinsel/_supportfn/_analyze, btree opclass support
  • Deferred families: cbuffer, npoint, pose, rgeo

Test plan

  • mvn test — 907/907 green on Linux (Java 21, Spark 3.5)
  • All BerlinMOD Q1–Q17 queries verified via BerlinMODBench
  • NAD/NAI collocated-point edge cases verified
  • Cross-type predicates verified with disjoint fixtures across STBox×TPoint, TBox×TNumber, Span/Spanset
  • Bucket alignment verified on positive, negative, and origin-offset inputs
  • Round-trip verified for all typed I/O aliases via re-serialisation

The single feat(parity) commit body lists every UDF added/extended and the new MeosNative symbols.

@estebanzimanyi estebanzimanyi force-pushed the feat/jmeos-1.3-berlinmod-poc branch 3 times, most recently from c07a2af to b17c0a4 Compare May 7, 2026 07:22
@estebanzimanyi estebanzimanyi force-pushed the feat/jmeos-1.3-berlinmod-poc branch from 01ca625 to 16b8627 Compare May 7, 2026 20:05
@estebanzimanyi estebanzimanyi changed the title feat: JMEOS 1.3 + BerlinMOD portable SQL POC — cross-platform verified feat(spark): JMEOS 1.3 + BerlinMOD Q1-Q17 portable SQL — 30/30 tests pass May 7, 2026
@estebanzimanyi estebanzimanyi force-pushed the feat/jmeos-1.3-berlinmod-poc branch 2 times, most recently from fed31d9 to 4a8ca7a Compare May 7, 2026 20:11
…37/37 tests

Upgrades MobilitySpark to JMEOS 1.3, adds BerlinMOD portable SQL (Q1-Q17 + QRT),
implements the TemporalParquet edge-to-cloud consumer pipeline, and adds full
test coverage.

UDFs registered
  Temporal: tgeompoint, atTime, asHexWKB, startTimestamp, endTimestamp,
            numInstants, speed, atGeometry
  Geo:      eIntersects(*), eContains, nearestApproachDistance, eDwithin,
            tgeompoint, trajectory, geomFromText,
            length, valueAtTimestamp, tDwithin, whenTrue, aDisjoint,
            geomContains,                                        (Q9-Q17)
            tgeompointFromBinary, maxSpeed, duration             (edge-to-cloud)
  (*) eIntersects now auto-detects geodetic tgeogpoint trajectories and
      promotes the polygon geometry via geom_to_geog() to avoid mixed-SRID
      errors when reading TemporalParquet shards written by MobilityDuck.

BerlinMOD portable SQL (RFC #861 named-function dialect)
  Q1-Q8 + QRT: initial set; Q9-Q17: full Spark SQL rewrites dropping the
  &&-operator pre-filters (no GiST index in Spark; MEOS UDFs evaluate).

Edge-to-cloud pipeline (edge-to-cloud/)
  N02AISData.java: reads TemporalParquet written by MobilityDuck asBinary(),
  decodes MEOS-WKB bytes via tgeompointFromBinary(), runs queries A/B/C
  matching quickstart.sql (MobilityDuck) and quickstart_mobilitydb.sql
  (PostgreSQL/MobilityDB) — same portable SQL across all three platforms.
  AISDataIntegrationTest (3): end-to-end Spark SQL against the demo Parquet.
  run_pipeline.sh: orchestrates MobilityDuck → Parquet → MobilitySpark.

Build fix
  pom.xml: exclude legacy org.mobiltydb + utils packages from compilation
  (JMEOS 1.0 API; not yet ported to JMEOS 1.3). Remove once ported.

Test coverage: 37 tests, 0 failures
  GeoUDFsTest (23): unit tests for all geo UDFs incl. new edge-to-cloud UDFs
  TemporalUDFsTest (8): unit tests for temporal UDFs
  BerlinMODIntegrationTest (3): end-to-end BerlinMOD Q1-Q17 + QRT
  AISDataIntegrationTest (3): end-to-end edge-to-cloud Parquet pipeline
@estebanzimanyi estebanzimanyi force-pushed the feat/jmeos-1.3-berlinmod-poc branch from 4a8ca7a to 212192f Compare May 7, 2026 21:54
@estebanzimanyi estebanzimanyi changed the title feat(spark): JMEOS 1.3 + BerlinMOD Q1-Q17 portable SQL — 30/30 tests pass feat(spark): JMEOS 1.3 + BerlinMOD Q1-Q17 + edge-to-cloud pipeline — 37/37 tests May 7, 2026
The org/mobiltydb/ and utils/ packages (legacy JMEOS 1.0 API, already
excluded from Maven compilation) and UDF/UDT test packages were not
exempted from the license-header CI check, causing every CI run to fail.

Align check_license.sh with pom.xml's exclude lists.  Also add the
PostgreSQL License header to Main.java, the one file in org/mobiltydb/
that the CI found before discovering the others.
meos_finalize() is an application-level shutdown call.  Invoking it in
@afterall causes the surefire forked JVM to crash during shutdown because
MEOS TLS cleanup races with Spark/JVM thread teardown after all 34 tests
have already passed.

Remove the @afterall finalizeMeos() method from TemporalUDFsTest and
remove ms.close() from BerlinMODIntegrationTest.tearDown().  The native
library is unloaded when the JVM exits; no explicit finalize needed.
Extends c8b182a to cover the two remaining test classes that still
called meos_finalize() or ms.close() in @afterall.

AISDataIntegrationTest and GeoUDFsTest follow the same pattern fixed
earlier for BerlinMODIntegrationTest and TemporalUDFsTest: calling
meos_finalize() while the JVM is still tearing down Spark thread pools
causes the surefire forked JVM to exit with code 1 without sending its
goodbye message, which is why the CI build was failing even though all
tests passed.  The native library is unloaded automatically when the
JVM exits; no explicit finalize is needed.
MEOS's geodetic operations (tpoint_length, tpoint_speed, geographic
distance) require an SRS catalogue to resolve SRID definitions such as
EPSG:4326.  In standalone mode, MEOS reads this catalogue from
spatial_ref_sys.csv (default path /usr/local/share/spatial_ref_sys.csv).

When MobilitySpark runs without a full MEOS installation — as in CI,
where only libmeos.so is extracted from the JMEOS jar — the file is
absent and any geodetic calculation fails with the native error
"got NULL for SRID (4326)" written to fd 1, which corrupts surefire's
IPC channel and causes all AIS integration test results to be lost,
turning a fully-passing test run into a BUILD FAILURE.

Bundle the catalogue as a JAR resource (src/main/resources/) and
extract it to a temp file in MobilitySparkSession.create(), then call
meos_set_spatial_ref_sys_csv() so MEOS can find it.  Extraction is
guarded by an AtomicBoolean so it happens at most once per JVM.
… ttextFromBinary, asBinary UDFs

Completes TemporalParquet type coverage for scalar temporal types.
MobilityDuck's asBinary() writes all types to Parquet BYTE_ARRAY;
MobilitySpark now has matching readers for tint, tfloat, tbool, and ttext
alongside the existing tgeompointFromBinary.

asBinary(STRING) → BINARY is the inverse: converts an internal hex-WKB
string back to raw bytes for writing temporal values into Parquet columns.
No MEOS call needed — the internal format is already hex-encoded MEOS-WKB.

All four fromBinary UDFs share the same implementation via temporal_from_hexwkb,
which is type-agnostic at the WKB level. Type-specific names match MobilityDuck's
surface for SQL discoverability.

Tests: 10 new cases in TemporalUDFsTest (round-trip + null safety for each UDF).
Total: 44/44 pass locally.
…loatspan, bigintspan, datespan)

Adds SpanUDFs with 10 TemporalParquet reader UDFs — one per span/spanset
type — using the type-agnostic span_from_hexwkb / spanset_from_hexwkb MEOS
functions. MobilitySparkSession now registers SpanUDFs alongside TemporalUDFs
and GeoUDFs. 11 unit tests cover round-trips and null inputs for all types.

Write-back uses the existing asBinary UDF (plain hex-decode, type-agnostic).
…e README

tgeompointFromBinary and tgeogpointFromBinary fill the gap for the primary
edge-to-cloud type: MobilityDuck writes tgeompoint as BYTE_ARRAY, now
MobilitySpark can read it back with a named UDF (same fromBinaryImpl as
the scalar temporal types).

README now documents all 28 registered UDFs in three groups (temporal axis,
geo, TemporalParquet read/write), adds a TemporalParquet edge-to-cloud
pipeline example, a Linux-only platform note, and an accurate project
structure tree. Test count updated to 51 (17+11+23).
…test count

tgeogpoint_in() writes "got NULL for SRID (4326)" to native stderr when the
spatial reference system CSV is not registered, corrupting the surefire channel
and crashing the forked JVM. tgeogpointFromBinary uses the same fromBinaryImpl
as tgeompointFromBinary (already tested), so no coverage is lost. Null safety
for tgeogpointFromBinary is still verified in fromBinary_null_returns_null.

README test count updated: 50 (23+16+11).
…tic unit tests

tgeogpoint_in() writes "got NULL for SRID (4326)" to native stderr when
meos_set_spatial_ref_sys_csv() has not been called, crashing the surefire
forked JVM. The previous workaround (dropping the tgeogpoint round-trip test)
was reverted. The correct fix is to load the bundled spatial_ref_sys.csv from
the test classpath in @BeforeAll, mirroring MobilitySparkSession.registerSpatialRefSys().

tgeogpointFromBinary_round_trips() is now fully verified on all platforms
including CI. Test count restored to 51 (23+17+11). README updated to match.
Patch utils.JarLibraryLoader to add macOS (libmeos.dylib) and fix Windows
(libmeos.dll) native library loading in addition to the existing Linux path.
The CI branch now also checks DYLD_LIBRARY_PATH so macOS GitHub Actions jobs
can set that env var after building MEOS from source.

CI workflow (maven.yml) gains two new jobs:
- macos: builds libmeos.dylib from MobilityDB source via Homebrew deps, sets
  DYLD_LIBRARY_PATH, and runs the full 57-test suite.
- windows: MSYS2/UCRT64 bootstrap; marked continue-on-error while the MEOS
  Windows standalone build stabilises.

README updated with per-platform setup instructions (§2.2–2.4).

All 57 Linux tests remain green.
- Add BerlinMOD Q1-Q17 portable SQL (18/18 PASS on MobilityDB/MobilityDuck/MobilitySpark)
- Add benchmark query fixtures (vehicles, query_points/regions/licences/periods/instants)
- Add three-platform benchmark driver with JSON timing output (BerlinMODBench)
- Fix SRID consistency in eIntersects UDF: extract trip bbox SRID and pass to geo_from_text
  so ensure_same_srid(3857, 3857) passes instead of failing on SRID=0 WKT geometry
- Add 100 new MEOS 1.3 UDFs across STBoxUDFs, SpanAccessorUDFs, TTextUDFs + 94 unit tests
- Fix JVM crashes from uninitialised MEOS: add MeosThread.ensureReady() to 9 missing UDF
  classes (AccessorUDFs, AnalyticsUDFs, ConstructorUDFs, PredicateUDFs, SpanAccessorUDFs,
  SpanAlgebraUDFs, SpanUDFs, STBoxUDFs, TTextUDFs) — prevents NULL session_timezone
  SIGSEGV and temporal_as_hexwkb crashes in executor threads and surefire forks
- Exclude berlinmod/data/trips.csv from git (138 MB, generated locally)
Running with local[*] on a 16-core machine created 16 concurrent MEOS
threads, triggering pg_tm buffer races and GEOS context races that caused
JVM crashes.  Each crash wrote a 3-5 GB core dump, which OOM-killed WSL2
and forced a terminal reboot.

Three changes to both run_mspark.sh and bench_mspark.sh:
- local[*] → local[2]: safe concurrency level for this dataset scale
- ulimit -c 0: suppress core dump files so a crash cannot OOM WSL2
- spark.driver.extraJavaOptions with java.library.path: ensures Spark
  always loads the libmeos.so with all thread-safety fixes installed,
  regardless of LD_LIBRARY_PATH state
…on; fix CI

- Rename libs/JMEOS-1.5.jar to libs/JMEOS-1.4.jar (ecosystem policy: JMEOS
  version number must match the MEOS API version it implements, currently 1.4)
- Update pom.xml dependency from version 1.5 to 1.4
- Add MeosThread.wrap() helpers (UDF1/UDF2/UDF3) so registerAll() can wrap
  lambdas at registration time, eliminating per-method ensureReady() boilerplate
- Fix CI: add install-file step for JMEOS-1.4; use lib/libmeos.so (MEOS 1.4,
  has meos_initialize_noexit_error_handler) instead of extracting from JMEOS-1.3
- 94/94 unit tests pass locally
- Write mspark.json after every query completes (not only at the end)
  so a JVM crash still leaves a valid file with all timings collected
  so far, and reveals exactly which query triggered the crash.
- Use an atomic write (write-to-tmp then rename) so a crash during the
  JSON write itself cannot corrupt the previous file.
@estebanzimanyi estebanzimanyi force-pushed the feat/jmeos-1.3-berlinmod-poc branch 2 times, most recently from be94aeb to 4a540a5 Compare May 10, 2026 14:29
@estebanzimanyi estebanzimanyi changed the title feat(spark): JMEOS 1.4 + BerlinMOD Q1-Q17 + 96.3% MobilityDB SQL parity (907 tests) feat(spark): JMEOS 1.4 + BerlinMOD Q1-Q17 + 99.3% MobilityDB SQL parity (907 tests) May 10, 2026
@estebanzimanyi estebanzimanyi force-pushed the feat/jmeos-1.3-berlinmod-poc branch from 4a540a5 to 49e323b Compare May 10, 2026 15:31
@estebanzimanyi estebanzimanyi changed the title feat(spark): JMEOS 1.4 + BerlinMOD Q1-Q17 + 99.3% MobilityDB SQL parity (907 tests) feat(spark): JMEOS 1.4 + BerlinMOD Q1-Q17 + 100% MobilityDB SQL parity (907 tests) May 10, 2026
🎉 Complete coverage of the active addressable MobilityDB SQL surface.
907/907 unit tests green. Compare to MobilityDuck 79.3% (current).

Adds ~315 UDFs across 16 new files + extends 12 existing files.
Coverage trajectory: 51% → 100% across the parity push. All 51 active
sections now at 100%.

==== New UDF classes ====
- TPointSTBoxOpsUDFs: 42 cross-type STBox×TPoint positional/topological
- TBoxOpsUDFs: 39 cross-type TBox×TNumber positional/topological
- SpansetOpsUDFs: 23 cross-type Span/Spanset positional/topological
- TemporalCompUDFs: 26 temporal comparison ops (teq/tne/tlt/tle/tgt/tge)
- TemporalBoxOpsUDFs: 30 cross-type box predicates
- AlwaysSpatialRelsUDFs: 12 'always' spatial-relationship predicates
- SetOpsUDFs: set×set positional + topological + per-type distance
- IOAliasUDFs: 100+ typed *From{HexWKB,Binary,Text,EWKT,EWKB,MFJSON} aliases
- SubtypeConstructorUDFs: typed Inst/Seq/SeqSet aliases + accessors
- AccessorAliasUDFs: typed span/spanset width, dates, valueSpan, set-values
  arrays, tboxes/stboxes/spans (array-returning), bins, splits, valueSet,
  segmentMin/MaxDuration, box2d, box3d (PostGIS embedded in MEOS),
  mobilitydbVersion, avgValue, tgeometry/tgeography conversions, quadSplit,
  getBin/timestamptzGetBin
- BucketUDFs: floatBucket, intBucket
- GeoAffineUDFs: translate/translate3, rotate, rotateX/Y/Z, transscale, affine
- TileUDFs: complete multi-dimensional tiling for parallel processing —
  spaceBoxes / spaceTimeBoxes / valueTimeBoxesT{float,int} / time/value
  Boxes/Tiles/Splits, getTimeTile / getSpaceTile / getSpaceTimeTile /
  getStboxTimeTile / getValueTile / getValueTimeTile / getTBoxTimeTile,
  spaceTiles / spaceTimeTiles / stbox/tint/tfloatTimeTiles, makeSimple
  (Temporal** array of simple sub-tpoints), tfloat/tintValueTiles,
  tfloat/tintValueSplit (Temporal** with Datum vsize/vorigin via IEEE bits),
  tfloat/tintValueTimeSplit, geoMeasure (tpoint+tfloat → geometry),
  asMVTGeom (tpoint → array of WKT geometries clipped to STBox bounds)
- SeqSetGapsUDFs: tbool/tint/tfloat/ttext/tgeompoint/tgeogpoint/tgeometry/
  tgeographySeqSetGaps (closes long-standing user request from MobilityDB
  issue #187 — array-of-instants → tsequenceset_make_gaps with native
  TInstant** packing)

==== Extended existing UDF classes ====
- GeoUDFs, DistanceUDFs, GeoAnalyticsUDFs, STBoxUDFs, TBoxUDFs,
  SimilarityUDFs, TTextUDFs, TransformUDFs, BoolOpsUDFs, TemporalUDFs,
  AccessorUDFs, SpanAlgebraUDFs — see docs/parity-status.md for full per-
  section coverage

==== MeosNative.java (new) ====
Supplementary JNR-FFI interface for ~70 MEOS-1.4 symbols not yet in
JMEOS-1.4: nad/nai/shortestline_tgeo_*, {dir}_stbox_tspatial /
_tspatial_stbox, float/int_get_bin, t{float,int}box_expand,
tgeometry/tgeography_in/_from_mfjson, temporal_mem_size, tgeoinst_make,
temporal_before/after_timestamptz, textcat_ttext_*, mobilitydb_version,
intset/bigintset/floatset_value_n out-param accessors, tnumber_avg_value,
tgeo*-to-tgeo* conversions, span_expand/_bins, tnumber/tgeo_split_*_n_*,
tnumber_tboxes / tgeo_stboxes, tpoint_minus_geom / _direction /
_make_simple, temporal_dyntimewarp_path / _frechet_path, tgeo_affine,
temporal_time_bins / tstzspan_bins / t{int,float}_value_bins,
stbox_quad_split, timestamptz_get_bin, stbox_get_space/time/space_time_tile,
tgeo_space/space_time_boxes, tnumber_value_time_boxes (Datum via long),
temporal_time_split / tgeo_space_split / tgeo_space_time_split (Temporal**
+ bin out-params), temporal_values_p + set_make_free + temptype_basetype
(valueSet path), temporal_segm_duration, stbox_to_box3d / _to_gbox +
box3d_out / gbox_out (PostGIS BOX3D/BOX2D embedded in MEOS),
stbox_space/time/space_time_tiles, t{int,float}box_time/value/value_time
_tiles, tnumber_value_split / _value_time_split (Datum splits with IEEE
bit-packed vsize/vorigin), tbox_get_value_time_tile (single-tile lookup
with MeosType basetype/spantype enum dispatch), tpoint_tfloat_to_geomeas,
tpoint_as_mvtgeom, tnumber_to_tbox.

==== Audit infrastructure ====
scripts/parity-audit.py — regenerable. Match strategy: snake_case →
camelCase, type-prefix stripping, wrapper-style dispatcher recognition,
type-suffix matching. Out-of-scope buckets:
  - Section-level: GiST/SPGiST opclasses, set/span/spanset index files,
    019_geo_constructors (PG geometric types), 999_oid_cache
  - Suffix-level: PG plumbing (_in/_out/_recv/_send, _transfn/_combinefn/
    _finalfn/_serialize/_deserialize, _sel/_joinsel/_supportfn/_analyze,
    _typmod_in/_out, _cmp/_eq/_ne/_lt/_le/_gt/_ge/_hash/_hash_extended)
  - Exact name: range/multirange (PG range types, NOT in MEOS),
    create_trip (BerlinMOD generator, PG-only), transform_gk (SECONDO
    Gauss-Krüger projection)
  Note: box2d/box3d ARE addressable (PostGIS embedded in MEOS).
Deferred families: cbuffer, npoint, pose, rgeo.
docs/parity-status.md — per-section coverage report (regenerable).
@estebanzimanyi estebanzimanyi force-pushed the feat/jmeos-1.3-berlinmod-poc branch from 49e323b to aaaa05e Compare May 10, 2026 16:09
… 10 residuals

JMEOS regenerated against MEOS 1.4 amalgamated headers (JMEOS PR MobilityDB#15)
exposes ~120 of the symbols previously bound by MobilitySpark's
supplementary MeosNative.java JNR-FFI interface. This commit:

  * bumps libs/JMEOS-1.4.jar to the regenerated artefact
  * migrates ~120 MeosNative.INSTANCE.X callsites to functions.X
    (or functions.MeosLibrary.meos.X for the long-typed timestamp /
     out-param functions where the OffsetDateTime wrapper is unwanted)
  * trims MeosNative.java from 326 lines / 133 method declarations to
    81 lines / 10 declarations — the residuals all live in MEOS private
    headers (meos_internal.h, meos_internal_geo.h, temporal/temporal.h,
    temporal/meos_catalog.h) and use Datum / MeosType parameters that
    the JMEOS generator does not currently lower:
      mobilitydb_version, mobilitydb_full_version,
      temporal_values_p, set_make_free, temptype_basetype,
      temporal_mem_size,
      tnumber_value_split, tnumber_value_time_split,
      tnumber_value_time_boxes, tbox_get_value_time_tile

  * fixes a handful of MEOS 1.4 API-rename callsites surfaced by the
    regen: temporal_value_at_timestamptz → tgeo_value_at_timestamptz,
    acontains_geo_tpoint → acontains_geo_tgeo,
    tpoint_transform_pipeline → tspatial_transform_pipeline,
    temporal_to_tsequence(string interp) → (int interp),
    temporal_append_tinstant(temp, inst, …) → (temp, inst, interp, …),
    temporal_lower_inc / _upper_inc → boolean directly (no "!= 0")

Tests: 907/907 green (unchanged from pre-regen baseline).
After JMEOS PR MobilityDB#15 added Datum -> long and MeosType -> int generator
lowering plus the 10 private-header extern declarations to its
amalgamated MEOS header, every MEOS symbol called by MobilitySpark is
exposed by functions.functions.* and there is no longer any reason to
maintain a parallel JNR-FFI interface in this repository.

Removed:
  - src/main/java/org/mobilitydb/spark/MeosNative.java (was 81 lines / 10
    declarations after the previous trim)
  - 'import org.mobilitydb.spark.MeosNative' from 5 callsite files

Migrated 13 callsites across AccessorAliasUDFs, TileUDFs, and
SubtypeConstructorUDFs:
  mobilitydb_version       -> functions.mobilitydb_version
  mobilitydb_full_version  -> functions.mobilitydb_full_version
  temporal_mem_size        -> functions.temporal_mem_size
  temptype_basetype        -> functions.temptype_basetype
  temporal_values_p        -> functions.temporal_values_p
  set_make_free            -> functions.set_make_free
  tnumber_value_split      -> functions.MeosLibrary.meos.tnumber_value_split
  tnumber_value_time_split -> functions.MeosLibrary.meos.tnumber_value_time_split
  tnumber_value_time_boxes -> functions.MeosLibrary.meos.tnumber_value_time_boxes
  tbox_get_value_time_tile -> functions.MeosLibrary.meos.tbox_get_value_time_tile

Tests: 907 / 907 green.
@estebanzimanyi estebanzimanyi force-pushed the feat/jmeos-1.3-berlinmod-poc branch from d591b53 to d4c08a3 Compare May 11, 2026 05:08
…handler

The noexit error handler was added to MEOS in 9ee6cf721 (May 9, JVM-
crash safety) and removed again in ae43d2f4a (May 10, JSONB integration
commit that reverted the related thread-safety patch in error.c).

JMEOS PR MobilityDB#15 followed suit and dropped the symbol from the regen
amalgam (it was no longer in libmeos.so). MobilitySpark callers — three
sites: MeosThread.java's per-thread init, MobilitySparkSession.create(),
and NativeMemoryLeakTest's @BeforeAll — now install the handler via
Class.getMethod() + invoke() and silently fall through if the symbol is
absent.

Net behaviour:
  * MEOS installed with noexit (older builds): handler installed,
    crashes prevented, BerlinMOD memory-leak tests run end-to-end.
  * MEOS installed without noexit (current branch): handler skipped;
    MEOS reverts to default_error_handler which calls exit() on any
    error. 845 / 907 MobilitySpark tests still pass. The 62 that don't
    are GeoUDFsExt5Test + STBoxUDFsTest, which trigger MEOS error
    paths that now tear down the JVM. Restoring noexit upstream brings
    the count back to 907 / 907.

Also bumps libs/JMEOS-1.4.jar to the regen artefact from JMEOS PR MobilityDB#15
commit 490ca07 (scripts + smoke test + dropped 2 missing externs).
Pulls in JMEOS PR MobilityDB#15 (rebased) which now includes the dropped
'inline' fix + the noexit handler from MobilityDB PR #939. Once
PR #939 lands and JMEOS PR MobilityDB#15 merges, MobilitySpark goes from
845 / 907 (reflective fallback installed by eb58420) to 906 / 907
(noexit installed natively).

The remaining 1 failure is MathUDFsExtTest.tnumberTrend_tint —
fixture passes a tint sequence (default STEP interpolation) to
tnumber_trend() which validates linear interpolation. Tracked as
a separate fixture-fix follow-up.
tnumber_trend requires linear interpolation; tint sequences default to
step interpolation, so MEOS validates and returns NULL. The previous
test asserted non-null, which only held while MEOS was lenient about
this validation; the validation has tightened in the current source
tree.

Renames tnumberTrend_tint_returns_nonnull -> tnumberTrend_tint_step_returns_null
and inverts the assertion to document the actual MEOS behaviour.
The tfloat case at line 95 covers the main code path.

Tests: 907 / 907 green.
…the helper

Once MobilityDB PR #939 is treated as landed (per the issued-PR-as-landed
policy), meos_initialize_noexit_error_handler exists in mainline meos.h
and libmeos.so. The reflective Class.getMethod() dance that survived
both the symbol-present and symbol-absent cases is no longer needed.

Three callsites simplified back to a direct call:
  - MeosThread.java          per-thread MEOS init
  - MobilitySparkSession.java  session-level init
                               (delegated to MeosThread.ensureReady;
                                duplicate meos_initialize/timezone calls
                                also removed)
  - NativeMemoryLeakTest.java  test-suite @BeforeAll

Net: ~24 lines of indirection removed across 3 files, plus one
unused 'import functions.functions' in the test.

Tests: 907 / 907 green.
MeosNative.java was deleted in commit 06765e2; tboxExpandFloat /
tboxExpandInt are now wired directly via functions.tfloatbox_expand /
tintbox_expand. Comment had no actionable content.
…EADY

MEOS spatial functions (eIntersects, eContains, eDwithin, etc.) call
into GEOS through liblwgeom.  GEOS 3.12 routes every reentrant
function through a thread-local context handle.  The first reentrant
call on a thread that has not invoked `GEOS_init_r()` raises
`context handle is uninitialized, call initGEOS` and aborts the JVM.

MEOS's internal spatial helpers call `initGEOS(lwnotice,
lwgeom_geos_error)` lazily on first use, but the call is not
thread-safe — two Spark task threads racing through the same MEOS
helper corrupt the global GEOS state.

Bind libgeos_c.so via JNR-FFI and call `GEOS_init_r()` from the
per-thread `MEOS_READY` `ThreadLocal` initialiser.  Each Spark task
thread now gets its own GEOS context the first time it enters
`ensureReady()`, before any MEOS spatial UDF can race the global
init.

Verified by running BerlinMOD Q2 (`eIntersects(t.trip, r.geom)`) end
to end on Spark `local[1]`.  Without this fix the JVM aborts at the
first spatial UDF call.

`local[2]` and higher still hit a separate race inside MEOS's
internal `initGEOS(lwnotice, lwgeom_geos_error)` call sequence (the
lwgeom callbacks are not reentrant).  Closing that race needs MEOS-
side changes — out of scope for this Spark commit.
The Spark master defaults to local[4] (validated against
MobilityDB/MobilityDB#949 + #815, which together make MEOS thread-safe
across GEOS, WKT/GMT, errno and timezone).  Users can override with
SPARK_MASTER=local[N] for tuned thread counts.

Validation on local[4]: Q1: 420 ms, Q2: 43.4 s (2.05x speedup vs
local[2]), Q3: 40.2 s, Q4: 46.5 s.  Clean exit, no hs_err_pid.
meos_initialize() owns the per-thread GEOS context handle (mirroring
the existing PROJ pattern in MEOS).  MeosThread.MEOS_READY only needs
to call meos_initialize, meos_initialize_timezone and the noexit error
handler — no separate JNR-FFI binding to libgeos_c is required.

Validated on --master local[4]: Q1: 420 ms, Q2: 43.4 s, no SIGSEGV,
no hs_err_pid.  Depends on MobilityDB/MobilityDB#949 (per-thread GEOS
context inside MEOS).
DistanceUDFs.registerAll() previously aliased "nearestApproachDistance"
to nadTgeoGeo (tgeo × geometry).  GeoUDFs.registerAll() registers the
same name to the tgeo × tgeo lambda (which calls nad_tgeo_tgeo via
temporal_from_hexwkb).  Because registerAll runs in alphabetical order
of UDF classes, DistanceUDFs shadowed GeoUDFs and resolved the bare
"nearestApproachDistance" call to nadTgeoGeo.

Q5 of BerlinMOD calls nearestApproachDistance(t1.trip, t2.trip) — both
tgeompoint.  Under the shadowed registration, the second tgeo's hex-
WKB string was passed to geo_from_text, which returned a parse error
on every cross-join row.

The tgeo × tgeo registration in GeoUDFs is what MobilityDB exposes
under the bare SQL name; keep it.  Callers wanting tgeo × geometry
use the explicit "nadTgeoGeo" name.

Validated: Q5 of MobilitySpark BerlinMOD on local[4]: 508 s (matches
the MobilityDB and MobilityDuck reference timings within the cross-
join cost).
H3IndexJnrBindings loads four MEOS H3 symbols directly through
JNR-FFI: tgeompoint_to_th3index, geo_to_h3index_set,
ever_eq_th3index_th3index, and ever_eq_anyof_h3indexset_th3index.
This sidesteps the JMEOS function generator's missing H3Index
typedef support, so the h3 prefilter surface runs against the
mainline JMEOS-1.4 jar.

Th3IndexPrefilterUDFs registers four Spark UDFs that wrap the JNR
bindings with hex-WKB string marshalling consistent with the rest
of the MobilitySpark UDF surface:

  tgeompointToTh3index(STRING, INTEGER) -> STRING
  geoToH3IndexSet(STRING, INTEGER) -> STRING
  everEqTh3IndexTh3Index(STRING, STRING) -> BOOLEAN
  everIntersectsH3IndexSetTh3Index(STRING, STRING) -> BOOLEAN

These match the MobilityDuck h3 prefilter surface (PR #131 on
MobilityDuck) and the MobilityDB SQL operator names, so the
BerlinMOD th3index portable SQL has a uniform shape across the
three platforms for the cross-join queries (Q4, Q5, Q6, Q7, Q10,
Q11, Q12, Q15, Q17).
The MEOS H3 symbols (geo_to_h3index_set, ever_eq_anyof_h3indexset_th3index,
etc.) are compiled into libmeos.so but the binary may not declare libh3
as a DT_NEEDED dependency.  The JVM loader hits an undefined-symbol
error on degsToRads / radsToDegs when MobilitySpark's h3 prefilter UDF
makes its first JNR-FFI call.

Set LD_PRELOAD=/usr/lib/x86_64-linux-gnu/libh3.so by default; allow
LIBH3=/path override.
close() runs before spark.stop() in the standard try-with-resources
benchmark/usage pattern, so meos_finalize() tears down MEOS global and
per-thread TLS state while Spark executor threads are still alive; their
subsequent teardown then double-frees the already-finalized MEOS TLS,
aborting the JVM with double free or corruption (fasttop) during
shutdown. The OS reclaims native MEOS memory at JVM exit, so the
explicit finalize is unnecessary and unsafe in the Spark and surefire
lifecycles; it belongs only in a standalone main that owns the whole
JVM with no live MEOS-using threads at exit.
expandSpace and geoTimeStbox serialised the STBox with
stbox_as_hexwkb(box, (byte) 0, ...). WKB variant 0 omits the SRID, so
bboxOverlaps re-parsing it via stbox_from_hexwkb gets SRID 0;
overlaps_tspatial_stbox then compares an SRID-3812 trip against an
SRID-0 box, returns false for every pair, and Q10's
WHERE ... AND bboxOverlaps(t2.trip, expandSpace(t1.trip, 3)) silently
drops all matches (0 rows instead of the expected count). Serialise
with WKB_EXTENDED (0x04) so the SRID round-trips; Q10 then returns the
correct rows, matching MobilityDB's native && operator.
CI vendors $GITHUB_WORKSPACE/lib/libmeos.so for the unit tests
(.github/workflows/maven.yml + pom surefire -Djava.library.path).
The committed binary was a stale MEOS build predating the
ensure_linear_interp guard in tnumber_trend, so tnumber_trend on a
step-interpolated tint returned a computed trend instead of NULL,
deterministically failing MathUDFsExtTest.tnumberTrend_tint_step_returns_null
(expected null, got a tfloat hex-WKB). The test and the
AnalyticsUDFs.tnumberTrend wrapper are correct against current MEOS:
verified that the current libmeos returns NULL for that exact input
while the stale one returns non-null. Replace lib/libmeos.so with a
current MEOS 1.4 build that carries the guard.
…lityDB

State present coverage only (858/858 active addressable temporal+geo, 100%)
with the scope partition and deferred families shared with MobilityDuck;
drop dated-milestone and changelog narrative. parity-status.md regenerated
from scripts/parity-audit.py against current MobilityDB master.
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