Alternate Polyadenylation analysis repository
(WIP - not done yet - eventual layout)
APA/
├── README.md
├── envs/
├── configs/
├── scripts/
│ ├── prep/
│ │ └── Bam_prep/
│ ├── test/
│ │ └── Pineda_test/
│ └── pilot/
│ └── Pilot/
├── workflow_notes/
└── docs/
Stage 1
---------
BAM preprocessing
↓
Stage 2
---------
UTR site quantification
(scUTRquant)
↓
Stage 3
---------
APA landscape analysis
↓
Stage 4
---------
Future work
• all modalities
• all brain regions
• APA-QTL
• Connect genetics to APA events in microglia
• DTU