Apply rustfmt for 2024 edition import sorting

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

Author: jayhesselberth

Cargo.lock

@@ -12,7 +12,7 @@ use std::io::Read;
 use std::num::NonZeroUsize;
 use std::path::Path;
 
-use super::minimal_parser::{get_record_size, parse_bam_record, MinimalRecord};
+use super::minimal_parser::{MinimalRecord, get_record_size, parse_bam_record};
 use crate::annotation::AnnotationIndex;
 
 /// Size of each batch of decompressed BAM data (target ~4MB per batch)

src/alignment/block_reader.rs

@@ -4,6 +4,6 @@ pub mod minimal_parser;
 mod paired;
 mod reader;
 
-pub use cigar::{total_overlap, Interval};
+pub use cigar::{Interval, total_overlap};
 pub use paired::{MateTracker, PendingMate};
 pub use reader::{AlignmentReader, AlignmentRecord};

src/alignment/mod.rs

@@ -8,7 +8,7 @@ pub use feature::{Feature, Strand};
 pub use index::AnnotationIndex;
 
 use crate::cli::Args;
-use anyhow::{bail, Result};
+use anyhow::{Result, bail};
 use log::info;
 
 /// Load annotation from GTF/GFF file and build spatial index.

src/annotation/mod.rs

@@ -1,4 +1,4 @@
-use clap::{builder::styling, Parser, ValueEnum};
+use clap::{Parser, ValueEnum, builder::styling};
 use std::path::PathBuf;
 
 fn styles() -> styling::Styles {

src/cli.rs

@@ -7,7 +7,7 @@ mod stats;
 mod worker;
 
 pub use constants::{
-    channel_buffer_size, mate_tracker_shards, threads_per_file, FRACTION_MULTIPLIER,
+    FRACTION_MULTIPLIER, channel_buffer_size, mate_tracker_shards, threads_per_file,
 };
 pub use filtering::Filterable;
 
@@ -20,8 +20,8 @@ use crossbeam::channel;
 use indicatif::{ProgressBar, ProgressStyle};
 use log::{debug, info};
 use rayon::prelude::*;
-use std::sync::atomic::{AtomicUsize, Ordering};
 use std::sync::Arc;
+use std::sync::atomic::{AtomicUsize, Ordering};
 
 use crate::alignment::block_reader::BamBlockReader;
 use crate::alignment::{AlignmentReader, AlignmentRecord, MateTracker, PendingMate};

src/counting/mod.rs

@@ -6,7 +6,7 @@
 use std::sync::Arc;
 
 use crate::alignment::block_reader::RecordBatch;
-use crate::alignment::minimal_parser::{get_record_size, parse_bam_record, MinimalRecord};
+use crate::alignment::minimal_parser::{MinimalRecord, get_record_size, parse_bam_record};
 use crate::alignment::total_overlap;
 use crate::annotation::{AnnotationIndex, Strand};
 use crate::cli::{Args, StrandMode};

src/counting/worker.rs

@@ -1,6 +1,6 @@
 use anyhow::{Context, Result};
-use flate2::write::GzEncoder;
 use flate2::Compression;
+use flate2::write::GzEncoder;
 use rustc_hash::FxHashMap;
 use std::fs::File;
 use std::io::{BufWriter, Write};

src/output/counts.rs

@@ -115,11 +115,7 @@ fn compare_gene_level(
         }
     }
 
-    if diffs.is_empty() {
-        Ok(())
-    } else {
-        Err(diffs)
-    }
+    if diffs.is_empty() { Ok(()) } else { Err(diffs) }
 }
 
 fn counts_match(actual: f64, expected: f64, tolerance: f64) -> bool {

tests/common/expected.rs

@@ -243,7 +243,7 @@ fn test_multiple_hits_same_gene_returns_unique() {
 #[test]
 fn test_multiple_genes_without_multi_overlap_returns_ambiguous() {
     let args = default_args(); // allow_multi_overlap = false
-                               // Two features from different genes
+    // Two features from different genes
     let hits = vec![
         FeatureHit {
             feature_idx: 0,