Website file tree contains broken links

[github-actions]

Summary

Status	Count
🔍 Total	3972
✅ Successful	3261
⏳ Timeouts	3
🔀 Redirected	79
👻 Excluded	117
❓ Unknown	0
🚫 Errors	21
⛔ Unsupported	491

Errors per input

Errors in _build/html/howto_guides/data_plan/index.html

• [302] https://dmptool.org/plans?plan%5Bfunder%5D%5Bid%5D=%7B+%22id%22%3A+4265%2C+%22name[%E2%80%A6]Microbiome+Data+Collaborative%22+%7D&plan%5Btemplate_id%5D=1321 | Rejected status code: 302 Found (configurable with "accept" option): Redirects may have been limited by "max-redirects".

Errors in _build/html/reference/software_development/index.html

• [TIMEOUT] https://www.gnu.org/software/make/ | Timeout
• [TIMEOUT] https://www.gnu.org/software/make/manual/html_node/Phony-Targets.html | Timeout
• [TIMEOUT] https://www.gnu.org/software/make/manual/html_node/Rule-Example.html | Timeout

Errors in _build/html/runtime/admin/index.html

• [404] https://www.nersc.gov/systems/spin/ | Rejected status code: 404 Not Found (configurable with "accept" option)

Errors in _build/html/runtime/howto-guides/author-changesheets/index.html

• [404] https://microbiomedata.github.io/nmdc-schema/doi/ | Rejected status code: 404 Not Found (configurable with "accept" option)

Errors in _build/html/runtime/nb/wf_automation/index.html

• [404] https://microbiomedata.github.io/nmdc-schema/Activity/ | Rejected status code: 404 Not Found (configurable with "accept" option)

Errors in _build/html/runtime/tutorials/metadata-in/index.html

• [404] https://api.microbiomedata.org/nmdcschema/biosample_set/fake | Rejected status code: 404 Not Found (configurable with "accept" option)

Errors in _build/html/workflows/chapters/2_Read_Based_Taxonomy/index.html

• [404] https://github.com/poeli/GOTTCHA2 | Rejected status code: 404 Not Found (configurable with "accept" option)
• [404] https://github.com/poeli/GOTTCHA2/blob/master/LICENSE | Rejected status code: 404 Not Found (configurable with "accept" option)

Errors in _build/html/workflows/chapters/3_Metagenome_Reads_QC/index.html

• [404] https://github.com/microbiomedata/ReadsQC/blob/documentation/input.json | Rejected status code: 404 Not Found (configurable with "accept" option)
• [302] https://jgi.doe.gov/data-and-tools/bbtools/ | Rejected status code: 302 Found (configurable with "accept" option): Redirects may have been limited by "max-redirects".

Errors in _build/html/workflows/chapters/4_Metagenome_Assembly/index.html

• [302] https://jgi.doe.gov/data-and-tools/bbtools/ | Error (cached)

Errors in _build/html/workflows/chapters/5_Metagenome_and_Metatranscriptome_Annotation/index.html

• [403] https://doi.org/10.1128/msystems.00804-20 | Rejected status code: 403 Forbidden (configurable with "accept" option)
• [404] https://portal.nersc.gov/cfs/m3408/test_data/metaT/SRR11678315.fastq.gz | Rejected status code: 404 Not Found (configurable with "accept" option)

Errors in _build/html/workflows/chapters/6_Metagenome_Assembled_Genome/index.html

• [403] https://doi.org/10.1093/bioinformatics/btz848 | Rejected status code: 403 Forbidden (configurable with "accept" option)

Errors in _build/html/workflows/chapters/7_Metatranscriptome_Workflow_Overview/index.html

• [302] https://jgi.doe.gov/data-and-tools/bbtools/ | Error (cached)

Errors in _build/html/workflows/chapters/8_Metatranscriptome_Reads_QC/index.html

• [302] https://jgi.doe.gov/data-and-tools/bbtools/ | Error (cached)
• [302] https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/data-preprocessing/ | Rejected status code: 302 Found (configurable with "accept" option): Redirects may have been limited by "max-redirects".

Errors in _build/html/workflows/chapters/12_GCMS_Metabolomics/index.html

• [404] https://github.com/microbiomedata/metaMS/blob/master/docs/index.rst | Rejected status code: 404 Not Found (configurable with "accept" option)

Errors in _build/html/workflows/chapters/13_LCMS_Metabolomics/index.html

• [404] https://github.com/microbiomedata/metaMS/blob/master/docs/index_lipid.rst | Rejected status code: 404 Not Found (configurable with "accept" option)
• [404] https://github.com/microbiomedata/metaMS/blob/master/wdl/metaMS_lcmsmetabolomics.wdl | Rejected status code: 404 Not Found (configurable with "accept" option)
• [502] https://gnps-external.ucsd.edu/gnpslibrary | Rejected status code: 502 Bad Gateway (configurable with "accept" option)

Errors in _build/html/workflows/chapters/15_LCMS_Lipidomics/index.html

• [404] https://github.com/microbiomedata/metaMS/blob/master/docs/index_lipid.rst | Rejected status code: 404 Not Found (configurable with "accept" option)

Redirects per input

Redirects in _build/html/_hooks/index.html

• [200] https://github.com/microbiomedata/docs/edit/main/content/home/src/_hooks/README.md | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/docs/edit/main/content/home/src/_hooks/README.md --[302]--> https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmicrobiomedata%2Fdocs%2Fedit%2Fmain%2Fcontent%2Fhome%2Fsrc%2F_hooks%2FREADME.md

Redirects in _build/html/_templates/footer.html

• [200] https://microbiomedata.org/privacy | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://microbiomedata.org/privacy --[307]--> https://www.lbl.gov/terms-and-conditions/web-privacy-notice/

Redirects in _build/html/explanation/community_conversations/index.html

• [200] https://github.com/microbiomedata/docs/edit/main/content/home/src/explanation/community_conversations.md | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/docs/edit/main/content/home/src/explanation/community_conversations.md --[302]--> https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmicrobiomedata%2Fdocs%2Fedit%2Fmain%2Fcontent%2Fhome%2Fsrc%2Fexplanation%2Fcommunity_conversations.md

Redirects in _build/html/explanation/fair_data/index.html

• [200] https://github.com/microbiomedata/docs/edit/main/content/home/src/explanation/fair_data.md | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/docs/edit/main/content/home/src/explanation/fair_data.md --[302]--> https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmicrobiomedata%2Fdocs%2Fedit%2Fmain%2Fcontent%2Fhome%2Fsrc%2Fexplanation%2Ffair_data.md
• [200] https://www.go-fair.org/implementation-networks/overview/fair-microbiome/ | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://www.go-fair.org/implementation-networks/overview/fair-microbiome/ --[301]--> https://www.go-fair.org/implementation-networks/overview/implementation-networks-archive/fair-microbiome/
• [200] https://www.nature.com/articles/sdata201618 | Redirect: Followed 3 redirects resolving to the final status of: OK. Redirects: https://www.nature.com/articles/sdata201618 --[303]--> https://idp.nature.com/authorize?response_type=cookie&client_id=grover&redirect_uri=https%3A%2F%2Fwww.nature.com%2Farticles%2Fsdata201618 --[302]--> https://idp.nature.com/transit?redirect_uri=https%3A%2F%2Fwww.nature.com%2Farticles%2Fsdata201618&code=7d179f2b-f6a0-4df0-a403-ab4a40551d7a --[302]--> https://www.nature.com/articles/sdata201618?error=cookies_not_supported&code=7d179f2b-f6a0-4df0-a403-ab4a40551d7a

Redirects in _build/html/howto_guides/api_gui/index.html

• [200] https://github.com/microbiomedata/docs/edit/main/content/home/src/howto_guides/api_gui.md | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/docs/edit/main/content/home/src/howto_guides/api_gui.md --[302]--> https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmicrobiomedata%2Fdocs%2Fedit%2Fmain%2Fcontent%2Fhome%2Fsrc%2Fhowto_guides%2Fapi_gui.md
• [200] https://microbiomedata.github.io/nmdc-schema/DataObject | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://microbiomedata.github.io/nmdc-schema/DataObject --[301]--> https://microbiomedata.github.io/nmdc-schema/DataObject/
• [200] https://w3id.org/nmdc/Biosample | Redirect: Followed 3 redirects resolving to the final status of: OK. Redirects: https://w3id.org/nmdc/Biosample --[307]--> https://api.microbiomedata.org/objects/Biosample --[307]--> https://microbiomedata.github.io/nmdc-schema/Biosample --[301]--> https://microbiomedata.github.io/nmdc-schema/Biosample/
• [200] https://w3id.org/nmdc/DataObject/ | Redirect: Followed 5 redirects resolving to the final status of: OK. Redirects: https://w3id.org/nmdc/DataObject/ --[307]--> https://api.microbiomedata.org/objects/DataObject/ --[307]--> http://api.microbiomedata.org/objects/DataObject --[308]--> https://api.microbiomedata.org/objects/DataObject --[307]--> https://microbiomedata.github.io/nmdc-schema/DataObject --[301]--> https://microbiomedata.github.io/nmdc-schema/DataObject/
• [200] https://w3id.org/nmdc/PlannedProcess/ | Redirect: Followed 5 redirects resolving to the final status of: OK. Redirects: https://w3id.org/nmdc/PlannedProcess/ --[307]--> https://api.microbiomedata.org/objects/PlannedProcess/ --[307]--> http://api.microbiomedata.org/objects/PlannedProcess --[308]--> https://api.microbiomedata.org/objects/PlannedProcess --[307]--> https://microbiomedata.github.io/nmdc-schema/PlannedProcess --[301]--> https://microbiomedata.github.io/nmdc-schema/PlannedProcess/
• [200] https://w3id.org/nmdc/Study | Redirect: Followed 3 redirects resolving to the final status of: OK. Redirects: https://w3id.org/nmdc/Study --[307]--> https://api.microbiomedata.org/objects/Study --[307]--> https://microbiomedata.github.io/nmdc-schema/Study --[301]--> https://microbiomedata.github.io/nmdc-schema/Study/

Redirects in _build/html/howto_guides/data_plan/index.html

• [200] https://github.com/microbiomedata/docs/edit/main/content/home/src/howto_guides/data_plan.md | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/docs/edit/main/content/home/src/howto_guides/data_plan.md --[302]--> https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmicrobiomedata%2Fdocs%2Fedit%2Fmain%2Fcontent%2Fhome%2Fsrc%2Fhowto_guides%2Fdata_plan.md
• [200] https://w3id.org/nmdc/nmdc | Redirect: Followed 2 redirects resolving to the final status of: OK. Redirects: https://w3id.org/nmdc/nmdc --[307]--> https://microbiomedata.github.io/nmdc-schema --[301]--> https://microbiomedata.github.io/nmdc-schema/

Redirects in _build/html/howto_guides/globus/index.html

• [200] https://github.com/microbiomedata/docs/edit/main/content/home/src/howto_guides/globus.md | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/docs/edit/main/content/home/src/howto_guides/globus.md --[302]--> https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmicrobiomedata%2Fdocs%2Fedit%2Fmain%2Fcontent%2Fhome%2Fsrc%2Fhowto_guides%2Fglobus.md
• [200] https://globus.org/ | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://globus.org/ --[301]--> https://www.globus.org/

Redirects in _build/html/howto_guides/portal_guide/index.html

• [200] https://github.com/microbiomedata/docs/edit/main/content/home/src/howto_guides/portal_guide.md | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/docs/edit/main/content/home/src/howto_guides/portal_guide.md --[302]--> https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmicrobiomedata%2Fdocs%2Fedit%2Fmain%2Fcontent%2Fhome%2Fsrc%2Fhowto_guides%2Fportal_guide.md
• [200] https://microbiomedata.org/nmdc-data-use-policy | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://microbiomedata.org/nmdc-data-use-policy --[301]--> https://microbiomedata.org/nmdc-data-use-policy/

Redirects in _build/html/howto_guides/submit2nmdc/index.html

• [200] https://apps.apple.com/app/apple-store/id6575364655?pt=278434&ct=docs&mt=8 | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://apps.apple.com/app/apple-store/id6575364655?pt=278434&ct=docs&mt=8 --[301]--> https://apps.apple.com/us/app/nmdc-field-notes/id6575364655?ct=docs&pt=278434
• [200] https://github.com/microbiomedata/docs/edit/main/content/home/src/howto_guides/submit2nmdc.md | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/docs/edit/main/content/home/src/howto_guides/submit2nmdc.md --[302]--> https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmicrobiomedata%2Fdocs%2Fedit%2Fmain%2Fcontent%2Fhome%2Fsrc%2Fhowto_guides%2Fsubmit2nmdc.md

Redirects in _build/html/index.html

• [200] https://github.com/microbiomedata/docs/edit/main/content/home/src/index.md | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/docs/edit/main/content/home/src/index.md --[302]--> https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmicrobiomedata%2Fdocs%2Fedit%2Fmain%2Fcontent%2Fhome%2Fsrc%2Findex.md
• [200] https://microbiomedata.org/contact | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://microbiomedata.org/contact --[301]--> https://microbiomedata.org/contact/

Redirects in _build/html/reference/data_portal/index.html

• [200] https://github.com/microbiomedata/docs/edit/main/content/home/src/reference/data_portal.md | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/docs/edit/main/content/home/src/reference/data_portal.md --[302]--> https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmicrobiomedata%2Fdocs%2Fedit%2Fmain%2Fcontent%2Fhome%2Fsrc%2Freference%2Fdata_portal.md

Redirects in _build/html/reference/software_development/index.html

• [200] https://claude.ai/ | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://claude.ai/ --[307]--> https://claude.ai/login
• [200] https://docs.pytest.org/ | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://docs.pytest.org/ --[302]--> https://docs.pytest.org/en/stable/
• [200] https://github.com/microbiomedata/docs/edit/main/content/home/src/reference/software_development.md | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/docs/edit/main/content/home/src/reference/software_development.md --[302]--> https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmicrobiomedata%2Fdocs%2Fedit%2Fmain%2Fcontent%2Fhome%2Fsrc%2Freference%2Fsoftware_development.md
• [200] https://jaws-docs.readthedocs.io/en/latest/Resources/best_practices.html | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://jaws-docs.readthedocs.io/en/latest/Resources/best_practices.html --[302]--> https://jaws-docs.jgi.doe.gov/en/latest/Resources/best_practices.html
• [200] https://nodejs.org/ | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://nodejs.org/ --[307]--> https://nodejs.org/en

Redirects in _build/html/runtime/admin/index.html

• [200] https://github.com/orgs/microbiomedata/teams/architecture-wg | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/orgs/microbiomedata/teams/architecture-wg --[302]--> https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Forgs%2Fmicrobiomedata%2Fteams%2Farchitecture-wg
• [200] https://www.nersc.gov/live-status/motd/ | Redirect: Followed 2 redirects resolving to the final status of: OK. Redirects: https://www.nersc.gov/live-status/motd/ --[301]--> https://www.nersc.gov/live-status/motd --[301]--> https://www.nersc.gov/users/status

Redirects in _build/html/runtime/explanation/identifiers/index.html

• [200] https://w3id.org/nmdc/Biosample | Redirect: Followed 3 redirects resolving to the final status of: OK. Redirects: https://w3id.org/nmdc/Biosample --[307]--> https://api.microbiomedata.org/objects/Biosample --[307]--> https://microbiomedata.github.io/nmdc-schema/Biosample --[301]--> https://microbiomedata.github.io/nmdc-schema/Biosample/
• [200] https://w3id.org/nmdc/id | Redirect: Followed 3 redirects resolving to the final status of: OK. Redirects: https://w3id.org/nmdc/id --[307]--> https://api.microbiomedata.org/objects/id --[307]--> https://microbiomedata.github.io/nmdc-schema/id --[301]--> https://microbiomedata.github.io/nmdc-schema/id/

Redirects in _build/html/runtime/howto-guides/claim-and-run-jobs/index.html

• [200] https://docs.dagster.io/concepts/ops-jobs-graphs/jobs-graphs | Redirect: Followed 2 redirects resolving to the final status of: OK. Redirects: https://docs.dagster.io/concepts/ops-jobs-graphs/jobs-graphs --[308]--> https://docs.dagster.io/guides/build/ops/graphs --[308]--> https://docs.dagster.io/guides/build/ops/graphs
• [200] https://docs.dagster.io/concepts/ops-jobs-graphs/ops | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://docs.dagster.io/concepts/ops-jobs-graphs/ops --[308]--> https://docs.dagster.io/guides/build/ops
• [200] https://docs.dagster.io/concepts/partitions-schedules-sensors/sensors | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://docs.dagster.io/concepts/partitions-schedules-sensors/sensors --[308]--> https://docs.dagster.io/guides/automate/sensors
• [200] https://docs.dagster.io/concepts/repositories-workspaces/repositories | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://docs.dagster.io/concepts/repositories-workspaces/repositories --[308]--> https://docs.dagster.io/api/dagster/repositories

Redirects in _build/html/runtime/howto-guides/create-triggers/index.html

• [200] https://docs.dagster.io/concepts/partitions-schedules-sensors/sensors | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://docs.dagster.io/concepts/partitions-schedules-sensors/sensors --[308]--> https://docs.dagster.io/guides/automate/sensors

Redirects in _build/html/runtime/howto-guides/update-sensors-ops/index.html

• [200] https://docs.dagster.io/concepts/ops-jobs-graphs/jobs-graphs | Redirect: Followed 2 redirects resolving to the final status of: OK. Redirects: https://docs.dagster.io/concepts/ops-jobs-graphs/jobs-graphs --[308]--> https://docs.dagster.io/guides/build/ops/graphs --[308]--> https://docs.dagster.io/guides/build/ops/graphs
• [200] https://docs.dagster.io/concepts/resources | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://docs.dagster.io/concepts/resources --[308]--> https://docs.dagster.io/guides/build/external-resources
• [200] https://docs.dagster.io/deployment/executors | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://docs.dagster.io/deployment/executors --[308]--> https://docs.dagster.io/guides/operate/run-executors
• [200] https://docs.dagster.io/deployment/run-launcher | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://docs.dagster.io/deployment/run-launcher --[308]--> https://docs.dagster.io/deployment/execution/run-launchers
• [200] https://docs.dagster.io/guides/deploy/code-locations/workspace-yaml | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://docs.dagster.io/guides/deploy/code-locations/workspace-yaml --[308]--> https://docs.dagster.io/guides/build/projects/workspaces/workspace-yaml

Redirects in _build/html/runtime/nb/api_access_via_python/index.html

• [200] https://github.com/microbiomedata/nmdc-runtime/issues/new | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/nmdc-runtime/issues/new --[302]--> https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmicrobiomedata%2Fnmdc-runtime%2Fissues%2Fnew

Redirects in _build/html/runtime/tutorials/json/index.html

• [200] https://docs.mongodb.com/manual/tutorial/query-documents/ | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://docs.mongodb.com/manual/tutorial/query-documents/ --[301]--> https://www.mongodb.com/docs/manual/tutorial/query-documents/

Redirects in _build/html/runtime/tutorials/metadata-in/index.html

• [200] https://docs.mongodb.com/v4.4/reference/command/delete/ | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://docs.mongodb.com/v4.4/reference/command/delete/ --[301]--> https://www.mongodb.com/docs/v4.4/reference/command/delete/
• [200] https://gist.github.com/ | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://gist.github.com/ --[302]--> https://gist.github.com/starred

Redirects in _build/html/tutorials/nav_data_portal/index.html

• [200] https://github.com/microbiomedata/docs/edit/main/content/home/src/tutorials/nav_data_portal.md | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/docs/edit/main/content/home/src/tutorials/nav_data_portal.md --[302]--> https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmicrobiomedata%2Fdocs%2Fedit%2Fmain%2Fcontent%2Fhome%2Fsrc%2Ftutorials%2Fnav_data_portal.md

Redirects in _build/html/tutorials/submission_portal/index.html

• [200] https://github.com/microbiomedata/docs/edit/main/content/home/src/tutorials/submission_portal.md | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/docs/edit/main/content/home/src/tutorials/submission_portal.md --[302]--> https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmicrobiomedata%2Fdocs%2Fedit%2Fmain%2Fcontent%2Fhome%2Fsrc%2Ftutorials%2Fsubmission_portal.md

Redirects in _build/html/workflows/chapters/2_Read_Based_Taxonomy/index.html

• [200] http://ccb.jhu.edu/software/kraken2 | Redirect: Followed 3 redirects resolving to the final status of: OK. Redirects: http://ccb.jhu.edu/software/kraken2 --[308]--> https://ccb.jhu.edu/software/kraken2 --[301]--> http://ccb.jhu.edu/software/kraken2/ --[308]--> https://ccb.jhu.edu/software/kraken2/
• [200] http://www.ccb.jhu.edu/software/centrifuge | Redirect: Followed 3 redirects resolving to the final status of: OK. Redirects: http://www.ccb.jhu.edu/software/centrifuge --[308]--> https://www.ccb.jhu.edu/software/centrifuge --[301]--> http://www.ccb.jhu.edu/software/centrifuge/ --[308]--> https://www.ccb.jhu.edu/software/centrifuge/

Redirects in _build/html/workflows/chapters/4_Metagenome_Assembly/index.html

• [200] https://www.ncbi.nlm.nih.gov/assembly/agp/AGP_Specification/ | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://www.ncbi.nlm.nih.gov/assembly/agp/AGP_Specification/ --[301]--> https://www.ncbi.nlm.nih.gov/genbank/genome_agp_specification/

Redirects in _build/html/workflows/chapters/5_Metagenome_and_Metatranscriptome_Annotation/index.html

• [200] http://reusabledata.org/cath | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: http://reusabledata.org/cath --[301]--> https://reusabledata.org/cath
• [200] http://reusabledata.org/cogs | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: http://reusabledata.org/cogs --[301]--> https://reusabledata.org/cogs
• [200] http://reusabledata.org/kegg-ftp | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: http://reusabledata.org/kegg-ftp --[301]--> https://reusabledata.org/kegg-ftp
• [200] http://reusabledata.org/pfam | Redirect: Followed 2 redirects resolving to the final status of: OK. Redirects: http://reusabledata.org/pfam --[301]--> https://reusabledata.org/pfam --[301]--> https://reusabledata.org/pfam
• [200] http://reusabledata.org/rfam | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: http://reusabledata.org/rfam --[301]--> https://reusabledata.org/rfam
• [200] http://reusabledata.org/smart | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: http://reusabledata.org/smart --[301]--> https://reusabledata.org/smart
• [200] http://reusabledata.org/supfam | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: http://reusabledata.org/supfam --[301]--> https://reusabledata.org/supfam
• [200] http://reusabledata.org/tigrfams | Redirect: Followed 2 redirects resolving to the final status of: OK. Redirects: http://reusabledata.org/tigrfams --[301]--> https://reusabledata.org/tigrfams --[301]--> https://reusabledata.org/tigrfams

Redirects in _build/html/workflows/chapters/6_Metagenome_Assembled_Genome/index.html

• [200] http://reusabledata.org/cogs | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: http://reusabledata.org/cogs --[301]--> https://reusabledata.org/cogs
• [200] http://reusabledata.org/pfam | Redirect: Followed 2 redirects resolving to the final status of: OK. Redirects: http://reusabledata.org/pfam --[301]--> https://reusabledata.org/pfam --[301]--> https://reusabledata.org/pfam
• [200] http://reusabledata.org/tigrfams | Redirect: Followed 2 redirects resolving to the final status of: OK. Redirects: http://reusabledata.org/tigrfams --[301]--> https://reusabledata.org/tigrfams --[301]--> https://reusabledata.org/tigrfams
• [200] http://www.microbesonline.org/fasttree/ | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: http://www.microbesonline.org/fasttree/ --[301]--> https://microbesonline.org/fasttree/
• [200] http://www.microbesonline.org/fasttree/FastTree.c | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: http://www.microbesonline.org/fasttree/FastTree.c --[301]--> https://microbesonline.org/fasttree/FastTree.c
• [200] https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-8-209 | Redirect: Followed 4 redirects resolving to the final status of: OK. Redirects: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-8-209 --[301]--> https://link.springer.com/article/10.1186/1471-2105-8-209 --[303]--> https://idp.springer.com/authorize?response_type=cookie&client_id=springerlink&redirect_uri=https%3A%2F%2Flink.springer.com%2Farticle%2F10.1186%2F1471-2105-8-209 --[302]--> https://idp.springer.com/transit?redirect_uri=https%3A%2F%2Flink.springer.com%2Farticle%2F10.1186%2F1471-2105-8-209&code=13c19a67-b50c-45a0-9a77-7f6ddf2edc5f --[302]--> https://link.springer.com/article/10.1186/1471-2105-8-209?error=cookies_not_supported&code=13c19a67-b50c-45a0-9a77-7f6ddf2edc5f
• [200] https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-02155-4 | Redirect: Followed 4 redirects resolving to the final status of: OK. Redirects: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-02155-4 --[301]--> https://link.springer.com/article/10.1186/s13059-020-02155-4 --[303]--> https://idp.springer.com/authorize?response_type=cookie&client_id=springerlink&redirect_uri=https%3A%2F%2Flink.springer.com%2Farticle%2F10.1186%2Fs13059-020-02155-4 --[302]--> https://idp.springer.com/transit?redirect_uri=https%3A%2F%2Flink.springer.com%2Farticle%2F10.1186%2Fs13059-020-02155-4&code=2e349876-5cec-4f02-b827-b066da092823 --[302]--> https://link.springer.com/article/10.1186/s13059-020-02155-4?error=cookies_not_supported&code=2e349876-5cec-4f02-b827-b066da092823
• [200] https://github.com/microbiomedata/nmdc-schema/files/14377315/nmdc_wfmag-11-6scpgx92.1_heatmap.pdf | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/nmdc-schema/files/14377315/nmdc_wfmag-11-6scpgx92.1_heatmap.pdf --[302]--> https://objects.githubusercontent.com/github-production-repository-file-5c1aeb/354168085/14377315?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAVCODYLSA53PQK4ZA%2F20260220%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20260220T203346Z&X-Amz-Expires=300&X-Amz-Signature=e2bd169c8340c97155a3fec4d008f6f08b8f8af3f13358a4e3b017fe511b144e&X-Amz-SignedHeaders=host&response-content-disposition=attachment%3Bfilename%3Dnmdc_wfmag-11-6scpgx92.1_heatmap.pdf&response-content-type=application%2Fpdf
• [200] https://github.com/microbiomedata/nmdc-schema/files/14377316/nmdc_wfmag-11-6scpgx92.1_barplot.pdf | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/nmdc-schema/files/14377316/nmdc_wfmag-11-6scpgx92.1_barplot.pdf --[302]--> https://objects.githubusercontent.com/github-production-repository-file-5c1aeb/354168085/14377316?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAVCODYLSA53PQK4ZA%2F20260220%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20260220T203346Z&X-Amz-Expires=300&X-Amz-Signature=18aa309b7f5fe539b71b182024579b0128d94f7a4b6fedb9137fb2cbe46508c4&X-Amz-SignedHeaders=host&response-content-disposition=attachment%3Bfilename%3Dnmdc_wfmag-11-6scpgx92.1_barplot.pdf&response-content-type=application%2Fpdf
• [200] https://github.com/psf/requests/blob/master/LICENSE | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/psf/requests/blob/master/LICENSE --[302]--> https://github.com/psf/requests/blob/main/LICENSE
• [200] https://github.com/PyMySQL/PyMySQL/blob/master/LICENSE | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/PyMySQL/PyMySQL/blob/master/LICENSE --[302]--> https://github.com/PyMySQL/PyMySQL/blob/main/LICENSE
• [200] https://github.com/user-attachments/assets/fee36f54-914c-45f7-bc07-379b4da4ea72 | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/user-attachments/assets/fee36f54-914c-45f7-bc07-379b4da4ea72 --[302]--> https://github-production-user-asset-6210df.s3.amazonaws.com/737589/354722121-fee36f54-914c-45f7-bc07-379b4da4ea72.png?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAVCODYLSA53PQK4ZA%2F20260220%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20260220T203347Z&X-Amz-Expires=300&X-Amz-Signature=711f8b69a75ec71edd3a70e3f6cfaa468ca5692d55f76ccd8537b0af280ab615&X-Amz-SignedHeaders=host
• [200] https://github.com/user-attachments/files/16498858/MetaG_test_ko_matrix.txt | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/user-attachments/files/16498858/MetaG_test_ko_matrix.txt --[302]--> https://objects.githubusercontent.com/github-production-repository-file-5c1aeb/265964562/16498858?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAVCODYLSA53PQK4ZA%2F20260220%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20260220T203346Z&X-Amz-Expires=300&X-Amz-Signature=d4a578d11566586a70ef86bbe6bd456ba2d40b0ce738a95f27f058d8984a0cb5&X-Amz-SignedHeaders=host&response-content-disposition=attachment%3Bfilename%3DMetaG_test_ko_matrix.txt&response-content-type=text%2Fplain
• [200] https://opensource.org/licenses/MIT | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://opensource.org/licenses/MIT --[301]--> https://opensource.org/license/MIT
• [200] https://www.nature.com/articles/s41579-020-0377-0 | Redirect: Followed 3 redirects resolving to the final status of: OK. Redirects: https://www.nature.com/articles/s41579-020-0377-0 --[303]--> https://idp.nature.com/authorize?response_type=cookie&client_id=grover&redirect_uri=https%3A%2F%2Fwww.nature.com%2Farticles%2Fs41579-020-0377-0 --[302]--> https://idp.nature.com/transit?redirect_uri=https%3A%2F%2Fwww.nature.com%2Farticles%2Fs41579-020-0377-0&code=6d9f61b3-9b26-4fd9-9bd1-dd9d6ab5a31d --[302]--> https://www.nature.com/articles/s41579-020-0377-0?error=cookies_not_supported&code=6d9f61b3-9b26-4fd9-9bd1-dd9d6ab5a31d
• [200] https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323987/ | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323987/ --[301]--> https://pmc.ncbi.nlm.nih.gov/articles/PMC6323987/

Redirects in _build/html/workflows/chapters/10_Metatranscriptome_Expression/index.html

• [200] https://readthedocs.org/ | Redirect: Followed 2 redirects resolving to the final status of: OK. Redirects: https://readthedocs.org/ --[302]--> https://app.readthedocs.org/welcome/ --[302]--> https://about.readthedocs.com/?ref=app.readthedocs.org
• [200] https://www.sphinx-doc.org/ | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://www.sphinx-doc.org/ --[302]--> https://www.sphinx-doc.org/en/master/

Redirects in _build/html/workflows/chapters/11_Metaproteomics/index.html

• [200] https://opensource.org/licenses/BSD-2-Clause | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://opensource.org/licenses/BSD-2-Clause --[301]--> https://opensource.org/license/BSD-2-Clause

Redirects in _build/html/workflows/chapters/12_GCMS_Metabolomics/index.html

• [200] https://github.com/microbiomedata/metaMS/tree/master/data/raw_data/GCMS_FAMES_01_GCMS-01_20191023.cdf | Redirect: Followed 1 redirect resolving to the final status of: OK. Redirects: https://github.com/microbiomedata/metaMS/tree/master/data/raw_data/GCMS_FAMES_01_GCMS-01_20191023.cdf --[301]--> https://github.com/microbiomedata/metaMS/blob/master/data/raw_data/GCMS_FAMES_01_GCMS-01_20191023.cdf

Full Github Actions output