jmzReader/pom.xml at master · masspp/jmzReader · GitHub

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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
	<modelVersion>4.0.0</modelVersion>

	<groupId>uk.ac.ebi.pride.tools</groupId>
	<artifactId>jmzreader</artifactId>
	<version>2.0.7-SNAPSHOT</version>
	<packaging>jar</packaging>
	<name>jmzReader</name>

    <description>The jmzReader library is a collection of parsers to process the most commonly used Mass Spectrometry text and xml based file formats using a single interface.</description>
	<url>https://github.com/PRIDE-Utilities/jmzReader</url>

    <parent>
        <groupId>uk.ac.ebi.pride.architectural</groupId>
        <artifactId>pride-core</artifactId>
        <version>1.0.1</version>
    </parent>

	<developers>
		<developer>
			<id>jgriss</id>
			<name>Johannes Griss</name>
			<email>jgriss@ebi.ac.uk</email>
			<organization>Proteomics Services Team - EBI</organization>
			<organizationUrl>http://www.ebi.ac.uk/proteomics</organizationUrl>
			<timezone>0</timezone>
		</developer>
        <developer>
            <id>yperez</id>
            <name>Yasset Perez-Riverol</name>
            <email>yperez@ebi.ac.uk</email>
            <organization>Proteomics Services Team - EBI</organization>
            <organizationUrl>http://www.ebi.ac.uk/proteomics</organizationUrl>
            <timezone>0</timezone>
        </developer>
        <developer>
            <id>mbernal</id>
            <name>Manuel Bernal-Llinares</name>
            <organization>Proteomics Team, EMBL-European Bioinformatics Institute</organization>
            <organizationUrl>http://www.ebi.ac.uk/pride</organizationUrl>
            <roles>
                <role>developer</role>
            </roles>
            <timezone>Europe/London</timezone>
        </developer>
	</developers>

	<properties>
        <!-- Logging capabilities -->
        <uk.ac.ebi.pride.architectural-pride-logging.version>1.0.0</uk.ac.ebi.pride.architectural-pride-logging.version>
        <uk.ac.ebi.pride.architectural-pride-tdd.version>1.0.3</uk.ac.ebi.pride.architectural-pride-tdd.version>
        <uk.ac.ebi.jmzml-jmzml.version>1.7.11</uk.ac.ebi.jmzml-jmzml.version>
        <uk.ac.ebi.pride.jaxb-pride-jaxb.version>1.0.22</uk.ac.ebi.pride.jaxb-pride-jaxb.version>
        <!-- Dependencies -->
        <uk.ac.ebi.pride.architectural-pride-xml-handling.version>1.0.3</uk.ac.ebi.pride.architectural-pride-xml-handling.version>
        <org.jvnet.jaxb2.maven2-maven-jaxb2-plugin.version>0.14.0</org.jvnet.jaxb2.maven2-maven-jaxb2-plugin.version>
    </properties>

    <dependencies>
        <dependency>
            <groupId>uk.ac.ebi.pride.architectural</groupId>
            <artifactId>pride-logging</artifactId>
            <type>pom</type>
            <version>${uk.ac.ebi.pride.architectural-pride-logging.version}</version>
        </dependency>
        <dependency>
            <groupId>uk.ac.ebi.pride.architectural</groupId>
            <artifactId>pride-tdd</artifactId>
            <type>pom</type>
            <version>${uk.ac.ebi.pride.architectural-pride-tdd.version}</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>uk.ac.ebi.pride.architectural</groupId>
            <artifactId>pride-xml-handling</artifactId>
            <type>pom</type>
            <version>${uk.ac.ebi.pride.architectural-pride-xml-handling.version}</version>
        </dependency>
        <dependency>
            <groupId>uk.ac.ebi.jmzml</groupId>
            <artifactId>jmzml</artifactId>
            <version>${uk.ac.ebi.jmzml-jmzml.version}</version>
        </dependency>
        <dependency>
            <groupId>uk.ac.ebi.pride.jaxb</groupId>
            <artifactId>pride-jaxb</artifactId>
            <version>${uk.ac.ebi.pride.jaxb-pride-jaxb.version}</version>
        </dependency>
        <dependency>
            <groupId>javax.xml.bind</groupId>
            <artifactId>jaxb-api</artifactId>
            <version>2.3.1</version>
        </dependency>
        <dependency>
            <groupId>org.glassfish.jaxb</groupId>
            <artifactId>jaxb-runtime</artifactId>
            <version>2.3.2</version>
            <scope>runtime</scope>
        </dependency>
    </dependencies>

    <build>
        <plugins>
            <plugin>
                <!-- you can use this plugin to generate the unimod object model from
                     the schema and binding files specified below. Note: this will
                     need an explicit maven goal call, since it is not integrated
                     into the standard mvn life cycle. The goal to use is:
                     org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:0.6.3:generate

                     NOTE: the code generation may overwrite existing classes, so care
                           should be taken with files that were manually modified.
                 -->
                <groupId>org.jvnet.jaxb2.maven2</groupId>
                <artifactId>maven-jaxb2-plugin</artifactId>
                <version>${org.jvnet.jaxb2.maven2-maven-jaxb2-plugin.version}</version>
                <configuration>
                    <extension>true</extension>
                    <schemaDirectory>src/main/resources</schemaDirectory>
                    <schemaIncludes>
                        <include>mzdata.xsd</include>
                        <include>mzXML_3.2.xsd</include>
                    </schemaIncludes>
                    <bindingDirectory>src/main/resources</bindingDirectory>
                    <bindingIncludes>
                        <include>mzdata-bindings.xjb</include>
                        <include>mzxml-bindings.xjb</include>
                    </bindingIncludes>
                    <generateDirectory>src/main/java2</generateDirectory>
                    <removeOldOutput>false</removeOldOutput>
                    <forceRegenerate>true</forceRegenerate>
                    <verbose>true</verbose>
                    <args>
                        <arg>-no-header</arg>
                    </args>
                </configuration>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-javadoc-plugin</artifactId>
            </plugin>
        </plugins>
    </build>

    <scm>
        <connection>scm:git:https://github.com/PRIDE-Utilities/jmzReader.git</connection>
        <developerConnection>scm:git:https://github.com/PRIDE-Utilities/jmzReader.git</developerConnection>
        <url>https://github.com/PRIDE-Utilities/jmzReader.git</url>
        <tag>HEAD</tag>
    </scm>

</project>