bio-tutorial/environment.yml at master · jvkersch/bio-tutorial · GitHub

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name: bio-tutorial
channels:
  - bioconda
  - conda-forge
  - defaults
dependencies:
  - biopython=1.70
  - bleach=1.4.2
  - libffi=3.2.1
  - mmtf-python=1.0.2
  - nglview=1.1.6
  - pyasn1-modules=0.0.5
  - scikit-bio=0.4.2
  - appdirs=1.4.3
  - asn1crypto=0.24.0
  - attrs=18.1.0
  - automat=0.7.0
  - backcall=0.1.0
  - bzip2=1.0.6
  - ca-certificates=2018.8.13
  - cachecontrol=0.12.5
  - certifi=2018.8.13
  - cffi=1.11.5
  - chardet=3.0.4
  - clangdev=6.0.1
  - constantly=15.1.0
  - contextlib2=0.5.5
  - cryptography=2.3.1
  - cryptography-vectors=2.3.1
  - cycler=0.10.0
  - decorator=4.3.0
  - entrypoints=0.2.3
  - freetype=2.9.1
  - future=0.16.0
  - html5lib=1.0.1
  - hyperlink=17.3.1
  - icu=58.2
  - idna=2.7
  - incremental=17.5.0
  - ipykernel=4.8.2
  - ipython=6.5.0
  - ipython_genutils=0.2.0
  - ipywidgets=7.4.0
  - jedi=0.12.1
  - jinja2=2.10
  - jpeg=9c
  - jsonschema=2.6.0
  - jupyter_client=5.2.3
  - jupyter_core=4.4.0
  - kiwisolver=1.0.1
  - libcxx=6.0.1
  - libiconv=1.15
  - libpng=1.6.35
  - libsodium=1.0.16
  - libtiff=4.0.9
  - libxml2=2.9.8
  - llvm-meta=6.0.1
  - llvmdev=6.0.1
  - lockfile=0.12.2
  - markupsafe=1.0
  - matplotlib=2.2.3
  - mistune=0.8.3
  - msgpack-python=0.5.6
  - natsort=5.3.3
  - nbconvert=5.3.1
  - nbformat=4.4.0
  - ncurses=6.1
  - nose=1.3.7
  - notebook=5.6.0
  - olefile=0.45.1
  - openssl=1.0.2o
  - pandas=0.23.4
  - pandoc=2.2.2
  - pandocfilters=1.4.2
  - parso=0.3.1
  - pexpect=4.6.0
  - pickleshare=0.7.4
  - pillow=5.2.0
  - pip=18.0
  - prometheus_client=0.3.0
  - prompt_toolkit=1.0.15
  - ptyprocess=0.6.0
  - pyasn1=0.4.4
  - pycparser=2.18
  - pygments=2.2.0
  - pyhamcrest=1.9.0
  - pyopenssl=18.0.0
  - pyparsing=2.2.0
  - pysocks=1.6.8
  - python=3.5.5
  - python-dateutil=2.7.3
  - pytz=2018.5
  - pyzmq=17.1.2
  - readline=7.0
  - reportlab=3.5.6
  - requests=2.19.1
  - send2trash=1.5.0
  - service_identity=17.0.0
  - setuptools=40.0.0
  - simplegeneric=0.8.1
  - six=1.11.0
  - sqlite=3.24.0
  - terminado=0.8.1
  - testpath=0.3.1
  - tk=8.6.8
  - tornado=5.1
  - traitlets=4.3.2
  - twisted=18.7.0
  - urllib3=1.23
  - wcwidth=0.1.7
  - webencodings=0.5.1
  - wheel=0.31.1
  - widgetsnbextension=3.4.0
  - xz=5.2.4
  - zeromq=4.2.5
  - zlib=1.2.11
  - zope.interface=4.5.0
  - bz2file=0.98
  - intel-openmp=2018.0.3
  - mkl=2018.0.3
  - numpy=1.12.1
  - scipy=1.1.0
prefix: /usr/local/miniconda3/envs/bio-tutorial