input file for methylation_plots.R make_emissions_figure

[athulmenon]

what is the input for methylation_plots.R make_emissions_figure

[jts]

It is a set of .tsv files, called from the main pipeline script here:

https://github.com/jts/methylation-analysis/blob/master/pipeline.make#L365

[athulmenon]

what is the input files for making emission figures and make_mean_shift_by_position_figure. we are unable to follow the pipeline make.

[jts]

They are tab-separated files containing the measured event levels for a particular k-mer, as output by methyltrain. This script is not meant to be run standalone, it is part of the pipeline we used for the nanopore methylation paper.

[athulmenon]

Thanks for the quick response. It does run but i got emission plot for one model. I am not getting plot for methylated model.