I saw that CellChat supports analysis of multiple spatial transcriptomics datasets, and I am wondering whether this workflow can also be used to compare two biological conditions rather than two replicates.
I have two spatial samples, one from a healthy condition and one from a disease condition. I would like to compare these two samples, mainly to visualize and compare the communication patterns on spatial plots. I already used SpatialCellChat to do the analysis for each sample. For comparison, do you have any tutorials or any advice? Thanks for the help.
I saw that CellChat supports analysis of multiple spatial transcriptomics datasets, and I am wondering whether this workflow can also be used to compare two biological conditions rather than two replicates.
I have two spatial samples, one from a healthy condition and one from a disease condition. I would like to compare these two samples, mainly to visualize and compare the communication patterns on spatial plots. I already used SpatialCellChat to do the analysis for each sample. For comparison, do you have any tutorials or any advice? Thanks for the help.