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Always include animal-mortality? #281

Description

@peterdesmet

For HG_JUVENILE, we now indicate a number of animal mortality fields, based on a new mortality_type column in the metadata spreadsheet.

`animal-mortality-type` = mortality_type,
`animal-mortality-date` = dplyr::if_else(
!is.na(mortality_type),
format(
as.POSIXct(track_session_end_date, tz = "UTC", format = "%Y-%m-%d %H:%M:%S"),
"%Y-%m-%dT%H:%M:%SZ"
),
NA_character_
),
`animal-death-comments` =
dplyr::if_else(!is.na(mortality_type), track_session_remarks, NA_character_),

E.g.

  • animal-mortality-type: predated <- Separate column in spreadsheet
  • animal-mortality-date: 2022-08-27T06:00:00Z
  • animal-death-comments: Predated by fox.

This is sought-after information (see e.g. https://ryoliver-lab.github.io/global-animal-mortality-project/). I think we should try to include for all datasets:

  • ARMENIAN_GULL: interrex, add to metadata
  • BOP_RODENT: ornitela, add to metadata
  • CURLEW_VLAANDEREN: ornitela, add to metadata
  • DELTATRACK: ornitela, add to metadata
  • H_GRONINGEN: uvabits, derive from deployment-end-type?
  • HG_JUVENILE: interrex, already added
  • HG_OOSTENDE: uvabits, derive from deployment-end-type?
  • HG_TEXEL: uvabits, derive from deployment-end-type?
  • LBBG_ADULT: ornitela, add to metadata
  • LBBG_IJMUIDEN: uvabits, derive from deployment-end-type?
  • LBBG_JUVENILE: ornitela, add to metadata
  • LBBG_SCHIERMONNIKOOG: uvabits, derive from deployment-end-type?
  • LBBG_TEXEL: uvabits, derive from deployment-end-type?
  • LBBG_ZEEBRUGGE: uvabits, derive from deployment-end-type?
  • MEDGULL_ANTWERPEN: ornitela, add to metadata
  • MH_ANTWERPEN: uvabits, derive from deployment-end-type?
  • MH_WATERLAND: uvabits, derive from deployment-end-type?
  • O_AMELAND: uvabits, derive from deployment-end-type?
  • O_ASSEN: uvabits, derive from deployment-end-type?
  • O_BALGZAND: uvabits, derive from deployment-end-type?
  • O_SCHIERMONNIKOOG: uvabits, derive from deployment-end-type?
  • O_VLIELAND: uvabits, derive from deployment-end-type?
  • O_WESTERSCHELDE: uvabits, derive from deployment-end-type?
  • RRP_VLAANDEREN: druid, add to metadata
  • SPOONBILL_VLAANDEREN: ornitela, add to metadata

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