miso-lims/.mkdocs.yml at develop · gencorefacility/miso-lims · GitHub

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site_name: MISO LIMS Documentation
site_url: http://miso-lims.github.io
site_description: MISO LIMS Documentation
site_author: Genome Sequence Informatics, Ontario Institute for Cancer Research
site_favicon: images/favicon.ico
repo_url: https://github.com/miso-lims/miso-lims

theme:
  name: readthedocs
  highlightjs: true
  hljs_languages:
    - yaml
    - bash
  logo: images/miso.png

nav:
  - About: index.md
  - Getting Started:
    - Building and Deploying: admin/installation-guide.md
    - Docker Compose Installation: admin/compose-installation-guide.md
    - Baremetal Installation: admin/baremetal-installation-guide.md
    - Site Configuration: admin/site-configuration.md
  - Walkthroughs: https://miso-lims.github.io/walkthroughs/
  - User Manual:
    - Introduction: user_manual/index.md
    - 1. Site Configuration: user_manual/site_configuration.md
    - 2. General Navigation: user_manual/general_navigation.md
    - 3. Barcode Label Printers: user_manual/barcode_label_printers.md
    - 4. Users and Groups: user_manual/users_and_groups.md
    - 5. Type Data: user_manual/type_data.md
    - 6. Projects: user_manual/projects.md
    - 7. Samples: user_manual/samples.md
    - 8. Requisitions: user_manual/requisitions.md
    - 9. Libraries: user_manual/libraries.md
    - 10. Library Aliquots: user_manual/library_aliquots.md
    - 11. Worksets: user_manual/worksets.md
    - 12. Pool Orders: user_manual/pool_orders.md
    - 13. Pools: user_manual/pools.md
    - 14. Sequencing Orders: user_manual/sequencing_orders.md
    - 15. Freezers and Rooms: user_manual/freezers_and_rooms.md
    - 16. Boxes: user_manual/boxes.md
    - 17. Transfers: user_manual/transfers.md
    - 18. Sequencing Containers: user_manual/sequencing_containers.md
    - 19. Instruments: user_manual/instruments.md
    - 20. Workstations: user_manual/workstations.md
    - 21. Sequencer Runs: user_manual/sequencer_runs.md
    - 22. Arrays : user_manual/arrays.md
    - 23. Array Runs: user_manual/array_runs.md
    - 24. QCs: user_manual/qcs.md
    - 25. Notes: user_manual/notes.md
    - 26. Attachments: user_manual/attachments.md
    - 27. Deletions: user_manual/deletions.md
    - 28. Workflows: user_manual/workflows.md
    - 29. European Nucleotide Archive Support: user_manual/european_nucleotide_archive_support.md
    - 30. Home Screen Widgets: user_manual/home_screen_widgets.md
    - 31. Other MISO Tools: user_manual/other_miso_tools.md
    - 32. QC Software Integration: user_manual/qc_integration.md
    - 33. Related Software: user_manual/related_software.md
  - Developer Guide: developers-manual.md
  - Index Checker: index-checker.md

extra_css:
    - css/numbering.css
    - css/extra.css

copyright: Copyright &copy; 2020 <a href="https://oicr-gsi.github.io/">Genome Sequence Informatics</a>, <a href="http://oicr.on.ca">Ontario Institute for Cancer Research</a>