This repository contains a few examples to help you start debugging your Snakemake workflows more efficiently.
In order to use them, make sure that you have snakemake installed, either in a dedicated conda environment or in a virtual venv environment.
Work through the examples in the following order:
Each file describes situations to learn about, the snakemake commands for you to run, and explanations of what is happening.
Contributions welcome! Please open an issue or a pull request.