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Setup

  • List of projects per Research Program
  • Use CMS wiki or my.nci.org.au to find name of project coordinator
  • Information to give to the project coordinator before joining (CI or delegate)
  • Request to join the project through my.nci.org.au
  • Determining resources required, e.g. running model, analysing data
    • Compute resources (KSU)
    • Storage resources (GB): short term (/short), medium term (/gdata) and archive (mdss)
  • Use of nci_account

Link to training

Monitor resource use

  • Review of the tools available to you
    • nci_account
    • _files_report
    • lquota
    • nci_monitor
    • du
    • ncdu
    • find

Link to training

Managing storage

  • Managing file ownership and permissions:
    • chmod
    • chgrp
    • ACLs
  • File compression:
    • nccompress
    • cdo
    • nco
    • gzip, zip, bzip
  • Prepare data for safe keeping over medium term or longer:
    • what can be deleted
      • Use of find to automate the process
    • documentation
    • tarring
      • tar
      • find to automate the process
  • transfer:
  • difference between cp and mv
  • rsync
  • scp
  • sftp
  • mdssdiff

Link to training