diff --git a/Dockerfile b/Dockerfile index 470c166..9b2f361 100644 --- a/Dockerfile +++ b/Dockerfile @@ -20,7 +20,7 @@ ENV LANG="en_US.UTF-8" \ AFNI_NIFTI_VIEW="orig" RUN apt-get update -qq && apt-get install -yq --no-install-recommends \ - apt-utils bzip2 ca-certificates curl locales unzip \ + apt-utils bzip2 ca-certificates curl locales unzip \ && apt-get clean \ && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* \ && localedef --force --inputfile=en_US --charmap=UTF-8 C.UTF-8 \ diff --git a/run.py b/run.py index bad1ccb..d2d4038 100755 --- a/run.py +++ b/run.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python3 + #!/usr/bin/env python3 from __future__ import absolute_import, division, print_function, unicode_literals import argparse @@ -381,6 +381,8 @@ def run(command, env={}, shell=False): try: anat_out_path = os.path.join(task_out_dir, 'anat_final.%s+tlrc.HEAD'%subject_label) + if not os.path.exists(anat_out_path): + anat_out_path = os.path.join(task_out_dir, 'anat_final.%s+orig.HEAD'%subject_label) anat_exts = np.array([float(ss) for ss in subprocess.check_output(["3dinfo", "-extent", anat_out_path]).decode().split('\t')]) anat_lrext = np.abs(anat_exts[0]) + np.abs(anat_exts[1]) anat_mont_dim = np.floor(np.sqrt(anat_lrext))