diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index fa7471f..a46c909 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -31,7 +31,7 @@ jobs: - name: Run mypy run: | - uv -v run mypy + uv -v run --group=doc mypy - name: Build & Install run: | @@ -39,18 +39,18 @@ jobs: uv -v pip install dist/scio_pypi-1.0.2.dev0-py3-none-any.whl - name: Build docs (Posix) - if: matrix.os != 'windows-latest' && matrix.python-version != '3.14' # github.com/ThalesGroup/scio/issues/38 + if: matrix.os != 'windows-latest' env: SPHINXOPTS: --fail-on-warning run: | - uv -v run make -C docs + uv -v run --group=doc make -C docs - name: Build docs (Windows) - if: matrix.os == 'windows-latest' && matrix.python-version != '3.14' # github.com/ThalesGroup/scio/issues/38 + if: matrix.os == 'windows-latest' env: SPHINXOPTS: --fail-on-warning run: | - uv -v run cmd /c "docs\\make.bat" + uv -v run --group=doc cmd /c "docs\\make.bat" - name: Run pytest id: run-pytest diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 7c3c208..616d4bb 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -89,7 +89,7 @@ For developers using `uv`, these can easily be checked with the following. ```bash # From root directory uv run pytest -uv run mypy +uv run mypy # Use `uv run --group=doc mypy` if doc was updated uvx ruff format --diff uvx ruff check ``` @@ -98,12 +98,12 @@ If your contribution changes the documentation, you can rebuild it with the foll ```bash # Ubuntu or MacOS -uv run make -C docs +uv run --group=doc make -C docs ``` ```powershell # Windows -uv run cmd /c "docs\make.bat" +uv run --group=doc cmd /c "docs\make.bat" ``` #### First time codebase contributors diff --git a/docs/.readthedocs.yaml b/docs/.readthedocs.yaml index 28b389c..10f367a 100644 --- a/docs/.readthedocs.yaml +++ b/docs/.readthedocs.yaml @@ -13,7 +13,7 @@ build: - pip install uv # Clone the repo hub first to avoid log in sphinx-gallery tutorials - git clone --branch hub https://github.com/ThalesGroup/scio.git ~/.cache/torch/hub/ThalesGroup_scio_hub - - uv run make -C docs + - uv run --group=doc make -C docs - mkdir -p $READTHEDOCS_OUTPUT - mv docs/_build/html $READTHEDOCS_OUTPUT diff --git a/docs/src/conf.py b/docs/src/conf.py index ed1b872..94a3b36 100644 --- a/docs/src/conf.py +++ b/docs/src/conf.py @@ -22,14 +22,18 @@ import torch from paramclasses import IMPL, MISSING, isparamclass -from sphinx.application import Sphinx -from sphinx.util import logging -from sphinx_gallery.sorting import ExplicitOrder # type: ignore[import-untyped] +from sphinx.application import Sphinx # type: ignore[import-not-found, unused-ignore] +from sphinx.util import logging # type: ignore[import-not-found, unused-ignore] +from sphinx_gallery.sorting import ( # type: ignore[import-not-found, import-untyped, unused-ignore] + ExplicitOrder, +) if TYPE_CHECKING: from re import Match - from sphinx.ext.autodoc import _AutodocObjType # noqa: TC004 (unclear...) + from sphinx.ext.autodoc import ( # type: ignore[import-not-found, unused-ignore] + _AutodocObjType, # noqa: TC004 (unclear...) + ) import scio diff --git a/docs/src/tutorials/visualizing_and_evaluating_ood_detection_algorithms.py b/docs/src/tutorials/visualizing_and_evaluating_ood_detection_algorithms.py index 098bf68..2f1ed57 100644 --- a/docs/src/tutorials/visualizing_and_evaluating_ood_detection_algorithms.py +++ b/docs/src/tutorials/visualizing_and_evaluating_ood_detection_algorithms.py @@ -7,12 +7,6 @@ # .. hint:: We recommend reading # :doc:`/auto_tutorials/inferring_with_confidence` first. # -# .. attention:: At the time of this release, the third-party library -# `datasets `_ may not be -# fully compatible with Python 3.14 yet. If necessary, use older -# Python versions. For more information, see `this issue -# `_. -# # In this tutorial, we use the # :doc:`/api_references/eval/classification` API from ``scio.eval`` to # compare several confidence score algorithms in a classification setup, diff --git a/pyproject.toml b/pyproject.toml index 3755700..4230a57 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -46,17 +46,20 @@ dependencies = [ "torch>=2.6", "torchinfo>=1.8", ] + [dependency-groups] dev = [ - "datasets>=4.3.0", "mypy>=1.17", "mypy-extensions>=1.1", - "myst-parser>=4.0.1", "pandas-stubs>=2.2.3.241126", - "pydata-sphinx-theme>=0.16.1", - "pytest>=8.3.4", + "pytest>=9", "pytest-cov>=6", "ruamel-yaml>=0.18.7", +] +doc = [ + "datasets>=4.4.0", + "myst-parser>=4.0.1", + "pydata-sphinx-theme>=0.16.1", "sphinx>=8.2.3", "sphinx-copybutton>=0.5.2", "sphinx-design>=0.6.1", diff --git a/test/expected/test_knn_label_count_expectations/array_cpu-double-ip-1-1-self_query=False.arr00.pt 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diff --git a/test/expected/test_knn_label_count_expectations/array_cpu-half-ip-100-49-self_query=True.arr00.pt b/test/expected/test_knn_label_count_expectations/array_half-cpu-ip-100-49-self_query=True.arr00.pt similarity index 100% rename from test/expected/test_knn_label_count_expectations/array_cpu-half-ip-100-49-self_query=True.arr00.pt rename to test/expected/test_knn_label_count_expectations/array_half-cpu-ip-100-49-self_query=True.arr00.pt diff --git a/test/expected/test_knn_label_count_expectations/array_cpu-half-ip-100-51-self_query=False.arr00.pt b/test/expected/test_knn_label_count_expectations/array_half-cpu-ip-100-51-self_query=False.arr00.pt similarity index 100% rename from test/expected/test_knn_label_count_expectations/array_cpu-half-ip-100-51-self_query=False.arr00.pt rename to test/expected/test_knn_label_count_expectations/array_half-cpu-ip-100-51-self_query=False.arr00.pt diff --git 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diff --git a/test/expected/test_knn_label_count_expectations/array_cpu-half-l2-25-49-self_query=True.arr00.pt b/test/expected/test_knn_label_count_expectations/array_half-cpu-l2-25-49-self_query=True.arr00.pt similarity index 100% rename from test/expected/test_knn_label_count_expectations/array_cpu-half-l2-25-49-self_query=True.arr00.pt rename to test/expected/test_knn_label_count_expectations/array_half-cpu-l2-25-49-self_query=True.arr00.pt diff --git a/test/expected/test_knn_label_count_expectations/array_cpu-half-l2-25-51-self_query=False.arr00.pt b/test/expected/test_knn_label_count_expectations/array_half-cpu-l2-25-51-self_query=False.arr00.pt similarity index 100% rename from test/expected/test_knn_label_count_expectations/array_cpu-half-l2-25-51-self_query=False.arr00.pt rename to test/expected/test_knn_label_count_expectations/array_half-cpu-l2-25-51-self_query=False.arr00.pt diff --git 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