CHANGELOG

Version 1.0 beta (20/07/2015):
- Defined a binary format for input files, latest revision in 16-09-2014.
- Input module for reading binary files with format of revision 16-09-2014.
- Output module for generating CSV files from the simulations.
- Added the new options to the command line syntax, such as the cycles (transition steps for a cycle).
- Attached a branch of pLinguaCore to generate binary files from .pli.
- Refined verbosity levels.
- Fixed some problems with BINV algorithm for generating random binomial variates.
- Fixed a problem when allocating space for rule applications (not enough space was given).
- The GPU simulator for PDP systems was extended and analysed in the paper:
M.A. Martínez-del-Amor, L.F. Macías-Ramos, L. Valencia-Cabrera, M.J. Pérez-
Jiménez. Parallel simulation of Population Dynamics P systems: updates and
roadmap. Natural Computing. Accepted.


Version 0.8 beta (11/12/2012):
- Simulation of PDP systems with the algorithm DCBA
- Versions for CPUs with OpenMP and for GPUs with CUDA
- Random generation of PDP systems, for performance testing
- The GPU simulator for PDP systems was introduced and analysed in the paper:
M.A. Martínez-del-Amor, I. Pérez-Hurtado, A. Gastalver-Rubio, A.C. Elster
M.J. Pérez-Jiménez. Population Dynamics P systems on CUDA. Proceedings of
the 10th Conference on Computational Methods in Systems Biology (CMSB2012),
London, 2012. Lecture Notes in Bioinformatics, 7605 (2012), 247-266.