Can I use T2 not T2 FLAIR?

[Minarose]

Hello 👋🏻

I have T2w images that I'd like to include as input, however, I noticed that the patterns_actions (line 702) and directories created (line 684) in the bb_file_manager.py only include T2 FLAIR. Is there a reason why just T2 is not included or can we go ahead and modify it to include T2w.nii.gz?

[shen4brains]

Hi Minarose,

T2 images can be handled by modifying, as you say, the expressions in bb_file_manager.py. There's an example of T2w (not FLAIR) processing in the Cam-CAN branch. See the code block starting here for how that branch handles T2w processing.

[Minarose]

Perfect, thank you!

[justinliuyuwang]

Hi Minarose, it looks like you're using the main branch. I've recently made some important changes to the pipeline for generating correct TVB inputs. Please be sure to pull the most recent version of the repository before running your data!

[Minarose]

Thanks for letting me know!