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47 lines (38 loc) · 1.07 KB
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**.DS_Store
**.bam
**.bam.bai
**.fastq
**.fastq.gz
bin/ScriptManager-v0.15-*.jar
data/BAM/*.bam*
data/BAM/NormalizationFactors/*.out
data/BAM/NormalizationFactors/*_scaling-ccr.count
data/BAM/NormalizationFactors/*_scaling-marginal.count
data/BAM/FragmentDistributions/*_InsertHistogram.out
data/BAM/FragmentDistributions/*_InsertSummary.out
data/BAM/FragmentDistributions/*_PE.png
data/hg38_files/hg38.fa*
data/hg38_files/hg38.fa.fai
data/RefPT-Krebs/BNase-Nucleosomes.bed
data/sample-BAM/*.bam*
data/sample-MEME/*.txt
00_Download_and_Preprocessing/ENCODE
00_Download_and_Preprocessing/ChIP
00_Download_and_Preprocessing/Benzonase
00_Download_and_Preprocessing/FASTQ
00_Download_and_Preprocessing/BAM
02_Call_Nucleosomes/AllParticles
02_Call_Nucleosomes/Intersect
02_Call_Nucleosomes/UniqueParticles
02_Call_Nucleosomes/temp-4_Build_TSS_RefPT
02_Call_Nucleosomes/MakePlusMinus
02_Call_Nucleosomes/Make_pHex-dHex
02_Call_Nucleosomes/Make_pHN-dHN
03_Call_JASPAR/FIMO
03_Call_JASPAR/temp-*
04_Call_Motifs/FIMO
04_Call_Motifs/temp-*
X_Bulk_Processing/Library
Z_Figures/F*
Z_Figures/S*
z-archive