Update GitHub Actions workflows

Author: nfrerebeau

.github/workflows/R-CMD-check.yaml

@@ -39,6 +39,7 @@ jobs:
           r-version: ${{ matrix.config.r }}
           http-user-agent: ${{ matrix.config.http-user-agent }}
           use-public-rspm: true
+          extra-repositories: https://archaeostat.r-universe.dev
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:

.github/workflows/pkgdown.yaml

@@ -30,6 +30,7 @@ jobs:
       - uses: r-lib/actions/setup-r@v2
         with:
           use-public-rspm: true
+          extra-repositories: https://archaeostat.r-universe.dev
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:

.github/workflows/test-coverage.yaml

@@ -21,6 +21,7 @@ jobs:
       - uses: r-lib/actions/setup-r@v2
         with:
           use-public-rspm: true
+          extra-repositories: https://archaeostat.r-universe.dev
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
@@ -34,15 +35,16 @@ jobs:
             clean = FALSE,
             install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
           )
+          print(cov)
           covr::to_cobertura(cov)
         shell: Rscript {0}
 
-      - uses: codecov/codecov-action@v4
+      - uses: codecov/codecov-action@v5
         with:
           # Fail if error if not on PR, or if on PR and token is given
           fail_ci_if_error: ${{ github.event_name != 'pull_request' || secrets.CODECOV_TOKEN }}
-          file: ./cobertura.xml
-          plugin: noop
+          files: ./cobertura.xml
+          plugins: noop
           disable_search: true
           token: ${{ secrets.CODECOV_TOKEN }}